Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NLY77_RS09915 Genome accession   NZ_CP100431
Coordinates   1974942..1975607 (-) Length   221 a.a.
NCBI ID   WP_043032914.1    Uniprot ID   A0A116QBH8
Organism   Streptococcus suis strain 1521251     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969942..1980607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY77_RS09910 (NLY77_09910) raiA 1974323..1974865 (-) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -
  NLY77_RS09915 (NLY77_09915) comFC/cflB 1974942..1975607 (-) 666 WP_043032914.1 ComF family protein Machinery gene
  NLY77_RS09920 (NLY77_09920) comFA/cflA 1975600..1976892 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  NLY77_RS09925 (NLY77_09925) - 1976949..1977581 (+) 633 WP_024394374.1 YigZ family protein -
  NLY77_RS09930 (NLY77_09930) cysK 1977671..1978597 (+) 927 WP_029178437.1 cysteine synthase A -
  NLY77_RS09935 (NLY77_09935) - 1978623..1978994 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  NLY77_RS09940 (NLY77_09940) - 1978996..1980396 (-) 1401 WP_172008900.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25835.63 Da        Isoelectric Point: 8.2726

>NTDB_id=705277 NLY77_RS09915 WP_043032914.1 1974942..1975607(-) (comFC/cflB) [Streptococcus suis strain 1521251]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=705277 NLY77_RS09915 WP_043032914.1 1974942..1975607(-) (comFC/cflB) [Streptococcus suis strain 1521251]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116QBH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484