Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EP379_RS11020 Genome accession   NZ_AP018724
Coordinates   2175244..2176599 (+) Length   451 a.a.
NCBI ID   WP_127477857.1    Uniprot ID   -
Organism   Sulfurivermis fontis strain JG42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2170244..2181599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP379_RS11000 sucD 2171175..2172044 (-) 870 WP_127477853.1 succinate--CoA ligase subunit alpha -
  EP379_RS11005 sucC 2172044..2173210 (-) 1167 WP_127477854.1 ADP-forming succinate--CoA ligase subunit beta -
  EP379_RS11010 - 2173391..2173621 (+) 231 WP_127477855.1 PP0621 family protein -
  EP379_RS11015 - 2173625..2175247 (+) 1623 WP_127477856.1 sensor histidine kinase -
  EP379_RS11020 pilR 2175244..2176599 (+) 1356 WP_127477857.1 sigma-54-dependent transcriptional regulator Regulator
  EP379_RS11025 - 2176679..2176906 (+) 228 WP_127477858.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  EP379_RS11030 - 2176896..2177336 (+) 441 WP_127477859.1 type II toxin-antitoxin system VapC family toxin -
  EP379_RS11035 pilA 2177718..2178146 (+) 429 WP_127477860.1 pilin Machinery gene
  EP379_RS11040 - 2178276..2178707 (+) 432 WP_127477861.1 pilin -
  EP379_RS11045 pilB 2178885..2180600 (+) 1716 WP_172600452.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49418.11 Da        Isoelectric Point: 6.5780

>NTDB_id=70519 EP379_RS11020 WP_127477857.1 2175244..2176599(+) (pilR) [Sulfurivermis fontis strain JG42]
MTADTKPSALVVDDEPDIRELLDLTLARMGVEACTAATLAEAKRLLGQRPFQFCLTDMRLPDGDGIDLVRHIQRHHPALP
VAVITAHGSMPTAIEALKAGAFDFVTKPVELQVLRELVHTALRVSAQATPQDNGSARLELLGDSPPMQAVRATIAKLARS
QAPVYISGESGTGKELAARLIHAQGPRAEAPFVPVNCGAIPTELMESELFGHKKGSFTGAVSDKEGLFQAAHGGTLFLDE
VADLPLHMQVKLLRAIQEKSVRPVGAQQETHIDVRILSATHKDLGALVREGRFREDLYYRINVIELRLPALRERPEDIPQ
LVERMLQRLAATWNCPLPSLEPDALQALQRYPFPGNVRELENILERAMTLCEGDTIRIPDLRLPDARPPGAVPGTPPGIS
PQPLDPLLDAIEKEAILKALEQTRYNKTAAAKLLGISFRVLRYRLQKLGLD

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=70519 EP379_RS11020 WP_127477857.1 2175244..2176599(+) (pilR) [Sulfurivermis fontis strain JG42]
ATGACCGCCGACACCAAACCCAGCGCCCTCGTCGTCGACGACGAACCGGACATCCGTGAGCTGCTCGACCTGACCCTCGC
CCGCATGGGCGTGGAGGCCTGCACCGCCGCCACCCTGGCGGAGGCGAAACGCCTGCTCGGCCAGCGCCCGTTCCAGTTCT
GCCTCACCGACATGCGCCTGCCCGACGGCGACGGCATCGACCTGGTACGCCACATCCAGCGCCACCATCCCGCCCTGCCG
GTGGCCGTGATCACCGCCCACGGCAGCATGCCCACGGCCATCGAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCACCAA
GCCGGTGGAGCTGCAGGTGCTGCGCGAACTGGTGCACACCGCCCTGCGCGTCTCCGCCCAGGCCACCCCGCAGGACAACG
GCTCGGCCCGACTGGAGTTGCTGGGCGACTCACCGCCGATGCAGGCGGTACGCGCCACCATCGCCAAGCTGGCGCGCAGC
CAGGCCCCGGTCTATATCAGCGGCGAGTCGGGCACCGGCAAGGAACTCGCGGCACGCCTGATCCACGCCCAGGGACCGCG
CGCCGAGGCCCCCTTCGTCCCGGTCAACTGCGGCGCCATCCCCACCGAGCTGATGGAAAGCGAGCTGTTCGGCCACAAAA
AGGGCAGCTTCACCGGCGCCGTCAGCGACAAGGAAGGCCTGTTCCAGGCCGCCCATGGCGGCACCCTGTTCCTCGACGAG
GTCGCCGACCTGCCACTGCACATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCCGTGCGCCCGGTGGGTGCCCA
GCAGGAAACCCACATCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGCCCTGGTGCGCGAAGGACGTTTCC
GCGAAGACCTCTACTACCGCATCAATGTCATCGAGCTGCGCCTGCCGGCCCTGCGCGAACGGCCCGAGGACATCCCCCAA
CTGGTGGAACGCATGCTGCAGCGCCTCGCCGCCACCTGGAACTGCCCCCTGCCCAGCCTGGAGCCGGACGCCCTGCAAGC
CCTCCAGCGCTACCCCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGGGCCATGACCCTCTGCGAAGGCG
ACACCATCCGCATCCCGGATCTGCGCCTGCCTGACGCCCGTCCCCCGGGGGCAGTGCCTGGCACCCCCCCCGGCATCTCG
CCCCAACCCCTCGACCCGCTGCTGGATGCCATTGAAAAAGAGGCCATCCTCAAGGCCTTGGAACAAACCCGCTACAACAA
GACCGCCGCCGCCAAACTGCTCGGCATCTCCTTCCGTGTCCTGCGCTACCGCCTGCAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)

Response regulator receiver domain (Response_reg)

(10-118)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

65.41

100

0.654
  pilR Acinetobacter baumannii strain A118

50.749

100

0.525
  luxO Vibrio cholerae strain A1552

38.6

98.226

0.379

Multiple sequence alignment