Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L4174_RS16350 Genome accession   NZ_CP100425
Coordinates   3545349..3546875 (-) Length   508 a.a.
NCBI ID   WP_248144751.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3540349..3551875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS16325 (L4174_016325) - 3541251..3541517 (+) 267 WP_248144756.1 YihD family protein -
  L4174_RS16330 (L4174_016330) ccoG 3541685..3543115 (+) 1431 WP_248144755.1 cytochrome c oxidase accessory protein CcoG -
  L4174_RS16335 (L4174_016335) - 3543217..3544206 (+) 990 WP_248144754.1 serine/threonine protein kinase -
  L4174_RS16340 (L4174_016340) - 3544280..3544882 (+) 603 WP_248144753.1 thiol:disulfide interchange protein DsbA/DsbL -
  L4174_RS16345 (L4174_016345) - 3544958..3545242 (-) 285 WP_248144752.1 hypothetical protein -
  L4174_RS16350 (L4174_016350) comM 3545349..3546875 (-) 1527 WP_248144751.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L4174_RS16355 (L4174_016355) ilvG 3547292..3548941 (+) 1650 WP_248144775.1 acetolactate synthase 2 catalytic subunit -
  L4174_RS16360 (L4174_016360) ilvM 3548938..3549198 (+) 261 WP_248144750.1 acetolactate synthase 2 small subunit -
  L4174_RS16365 (L4174_016365) - 3549214..3550149 (+) 936 WP_248144749.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54567.63 Da        Isoelectric Point: 8.0085

>NTDB_id=705132 L4174_RS16350 WP_248144751.1 3545349..3546875(-) (comM) [Photobacterium sp. CCB-ST2H9]
MTLAIVHSRACVGVDAPAVTVEVHLSNGLPAVNLVGLPETTVKEARDRVRSAIVNANFEFPARRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDSKLHDHEFLGELALSGELRPVKGALPAALAAKEANRCLVLPDANGDQAALVGRDRHKSAASL
LAVCAYLCGQESLSLHCREPGQREQVNHGRDMQDIIGQQQGKRALEIAAAGGHNLLFVGPPGTGKTMLASRLCDLLPEMA
VEEALETAAITSLTAQSLHAGNWRNRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLREPL
ESGEIVISRASSKTTFPARFQLIGALNPSPTGYYEGSQARTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLAQGGD
RGEATPVIKERVAEARSRMHHRSGKINALLGTRELDKHCALAKVDAEFLETALHQLGLSIRAYHRIIKVARTIADLAGKP
DIERAHLAEALGYRAMDRLLKQLTSQVV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=705132 L4174_RS16350 WP_248144751.1 3545349..3546875(-) (comM) [Photobacterium sp. CCB-ST2H9]
ATGACGCTGGCAATCGTGCACAGTAGGGCTTGTGTCGGAGTTGATGCTCCGGCTGTTACCGTTGAAGTTCACCTCAGTAA
TGGTCTGCCTGCGGTGAATCTGGTTGGGCTGCCGGAGACGACGGTGAAGGAAGCGAGAGACCGGGTCAGAAGTGCCATCG
TGAATGCCAATTTCGAATTTCCGGCCCGGCGGATTACGGTCAATCTGGCGCCCGCGGACTTGCCGAAAGAAGGCGGTCGG
TTTGATCTGCCCATCGCTTTGGGTATTCTTGCAGCTTCCGGGCAGATTCCTGATAGTAAGCTGCACGATCATGAGTTTTT
AGGGGAATTGGCGCTTTCCGGTGAACTGCGGCCAGTGAAAGGCGCCCTGCCCGCCGCACTGGCGGCCAAAGAGGCCAACC
GTTGTCTGGTTTTGCCGGATGCCAATGGGGATCAGGCCGCGCTGGTGGGCCGCGACAGACACAAATCAGCCGCCAGTTTG
CTGGCGGTCTGCGCTTATCTGTGTGGACAGGAGTCCTTGTCGCTGCATTGCCGGGAACCGGGACAGCGCGAGCAGGTAAA
TCACGGCCGGGACATGCAGGACATTATCGGTCAGCAGCAGGGAAAACGGGCGCTGGAAATTGCAGCTGCAGGCGGTCACA
ACCTGCTGTTTGTCGGCCCGCCCGGCACCGGTAAGACGATGCTGGCCTCGCGGCTGTGCGATCTGCTGCCCGAGATGGCT
GTTGAGGAAGCACTGGAAACCGCTGCCATTACTTCTCTGACCGCTCAGTCGCTCCATGCCGGTAACTGGCGCAATCGTCC
GTTTCGGGCACCGCATCATTCCAGTTCAATGGCAGCACTGGTCGGTGGCGGTTCGATCCCCCGCCCCGGTGAAATCTCGC
TGGCTCATAACGGCATTTTGTTTTTAGATGAAATGCCGGAGTTTGAGCGGAAAGTGCTGGATTCTTTACGGGAACCGCTT
GAATCTGGCGAGATCGTGATTTCTCGTGCCAGCAGCAAAACCACCTTTCCGGCACGGTTTCAGCTCATCGGGGCACTTAA
TCCCAGTCCGACCGGTTACTACGAAGGCAGCCAGGCGCGCACTAATCCTCAGGCGATATTGCGCTATTTGGGACGACTCT
CCGGCCCTTTGCTGGACCGGTTTGATATGTCGATTGAAATACCAGCCCTGCCCCGGGGAACACTGGCGCAGGGCGGCGAT
CGAGGCGAAGCCACGCCTGTGATTAAGGAAAGAGTGGCTGAGGCACGCAGTCGGATGCATCACCGCAGTGGTAAGATCAA
TGCCCTTCTGGGAACCCGTGAGCTGGATAAACACTGTGCCCTGGCCAAAGTTGATGCGGAATTCCTCGAAACTGCCCTGC
ATCAACTCGGGCTGTCGATTCGCGCCTATCACCGGATTATTAAAGTTGCCCGCACTATCGCCGACTTGGCCGGTAAGCCT
GACATTGAAAGGGCGCATCTGGCTGAGGCATTAGGCTACCGCGCCATGGATCGATTGCTGAAGCAATTGACGAGTCAGGT
GGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

78.15

100

0.782
  comM Vibrio campbellii strain DS40M4

77.953

100

0.78
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Haemophilus influenzae Rd KW20

62.868

100

0.63
  comM Legionella pneumophila str. Paris

50.704

97.835

0.496
  comM Legionella pneumophila strain ERS1305867

50.704

97.835

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.606

0.429