Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NIN90_RS01680 Genome accession   NZ_CP100422
Coordinates   357592..358125 (+) Length   177 a.a.
NCBI ID   WP_014205867.1    Uniprot ID   A0A0Q2XSJ5
Organism   Vibrio furnissii strain 104486766     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 352592..363125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS01665 uvrA 352701..355523 (-) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -
  NIN90_RS01670 galU 355661..356530 (-) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NIN90_RS01675 qstR 356659..357309 (-) 651 WP_254413565.1 LuxR C-terminal-related transcriptional regulator Regulator
  NIN90_RS01680 ssb 357592..358125 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  NIN90_RS01685 csrD 358261..360255 (+) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  NIN90_RS01690 - 360263..361708 (+) 1446 WP_254413566.1 MSHA biogenesis protein MshI -
  NIN90_RS01695 gspM 361708..362358 (+) 651 WP_208549331.1 type II secretion system protein GspM -
  NIN90_RS01700 - 362351..362662 (+) 312 WP_004724074.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19671.81 Da        Isoelectric Point: 5.7626

>NTDB_id=705057 NIN90_RS01680 WP_014205867.1 357592..358125(+) (ssb) [Vibrio furnissii strain 104486766]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=705057 NIN90_RS01680 WP_014205867.1 357592..358125(+) (ssb) [Vibrio furnissii strain 104486766]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGCATGCCAGCACAGGGTGGCGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCTGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XSJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

90.503

100

0.915
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.559
  ssb Neisseria meningitidis MC58

48.023

100

0.48
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.48