Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NIN90_RS01675 Genome accession   NZ_CP100422
Coordinates   356659..357309 (-) Length   216 a.a.
NCBI ID   WP_254413565.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 351659..362309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS01665 uvrA 352701..355523 (-) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -
  NIN90_RS01670 galU 355661..356530 (-) 870 WP_004724089.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NIN90_RS01675 qstR 356659..357309 (-) 651 WP_254413565.1 LuxR C-terminal-related transcriptional regulator Regulator
  NIN90_RS01680 ssb 357592..358125 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  NIN90_RS01685 csrD 358261..360255 (+) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  NIN90_RS01690 - 360263..361708 (+) 1446 WP_254413566.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24783.48 Da        Isoelectric Point: 8.7565

>NTDB_id=705056 NIN90_RS01675 WP_254413565.1 356659..357309(-) (qstR) [Vibrio furnissii strain 104486766]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLTITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=705056 NIN90_RS01675 WP_254413565.1 356659..357309(-) (qstR) [Vibrio furnissii strain 104486766]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGACCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTACGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCACCATCACACACAAGCAACCATTGAGCTCACCACACGCGAG
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAAATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACTCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

49.776

100

0.514
  qstR Vibrio campbellii strain DS40M4

50.926

100

0.509