Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIN90_RS00120 Genome accession   NZ_CP100422
Coordinates   26646..28169 (+) Length   507 a.a.
NCBI ID   WP_238825495.1    Uniprot ID   -
Organism   Vibrio furnissii strain 104486766     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 21646..33169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIN90_RS00105 ilvE 23270..24211 (-) 942 WP_004728750.1 branched-chain-amino-acid transaminase -
  NIN90_RS00110 ilvM 24223..24507 (-) 285 WP_004728751.1 acetolactate synthase 2 small subunit -
  NIN90_RS00115 ilvG 24519..26165 (-) 1647 WP_232658294.1 acetolactate synthase 2 catalytic subunit -
  NIN90_RS00120 comM 26646..28169 (+) 1524 WP_238825495.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIN90_RS00125 - 28273..29166 (+) 894 WP_158141276.1 acyltransferase -
  NIN90_RS00130 - 29206..29805 (-) 600 WP_004728756.1 thiol:disulfide interchange protein DsbA/DsbL -
  NIN90_RS00135 - 29836..30822 (-) 987 WP_232658303.1 serine/threonine protein kinase -
  NIN90_RS00140 ccoG 30867..32291 (-) 1425 WP_232658304.1 cytochrome c oxidase accessory protein CcoG -
  NIN90_RS00145 - 32551..32817 (-) 267 WP_004728762.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54979.90 Da        Isoelectric Point: 7.6714

>NTDB_id=705053 NIN90_RS00120 WP_238825495.1 26646..28169(+) (comM) [Vibrio furnissii strain 104486766]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIALPKLSDHEFIGELALSGEIRSVKGVLPAALAANQAQRSLVVPHHNGDQAALVGQEQHKSARTL
LEVCADLCGQQTLSLFQSDAHDVGAPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLHSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLNGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=705053 NIN90_RS00120 WP_238825495.1 26646..28169(+) (comM) [Vibrio furnissii strain 104486766]
ATGGGACTCGCAATTATTCACAGCCGCGCCAGCATTGGGGTACAGGCACCGGCTGTGACGGTGGAAGTGCACATCAGTAA
CGGCATGCCGGGGTTTACGTTGGTCGGTTTGCCCGAGACCACCGTCAAAGAATCCCGCGATCGTGTGCGCAGCGCCATCA
TCAACTCCAAATTTGAATTTCCCGCCAAACGCATCACGGTGAATTTAGCCCCCGCCGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGTATTTTGGCCGCTTCGGATCAGATAGCGCTGCCCAAACTGAGCGATCATGAGTTCAT
TGGGGAATTGGCACTGTCGGGGGAAATTCGCAGCGTCAAAGGCGTGCTGCCTGCGGCGCTGGCTGCCAATCAAGCGCAGC
GCAGTTTGGTGGTGCCTCATCACAATGGCGATCAAGCCGCGCTGGTGGGGCAAGAGCAACATAAATCGGCGCGCACGTTA
CTTGAAGTGTGCGCTGACTTGTGCGGCCAGCAGACGTTGTCGCTGTTTCAAAGTGACGCGCACGACGTTGGCGCGCCGCG
CGAGCGCGATTTGCAGGACATCATTGGTCAGCAGCAGGGGAAGCGCGCGTTGGAGATCGCAGCGGCAGGTAATCACAATT
TGCTGTTTCTCGGCCCGCCGGGCACGGGCAAAACCATGTTGGCCTCGCGGTTGTGCGACCTGCTGCCGGAGATGACCGAA
GCCGAGGCGATGGAAACTGCGTCGGTGGCCTCATTGACGCAACAAGAAATCAATCAGCACAACTGGAAACAGCGCCCGTT
TCGCGCGCCGCATCATTCCAGTTCCATGGCTGCACTGGTGGGCGGCGGTTCCATTCCTCGCCCCGGAGAAATTTCGCTCG
CCCACAATGGGTTGCTGTTTTTAGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCGCTGCGCGAACCATTGGAA
TCGGGCGAGATCATTATCTCGCGTGCGCAGGGTAAAACTCGTTTCCCAGCACGGTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTGCGTTACTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCATTGCCCAAAGGCACTTTGTCACACGGCGGCGATCGC
GGTGAACCGACGGCAGTGGTGCAGGCGCGGGTCTTTCGCGCGCGTGAAACCATGCTGGCGCGCAGTGGGAAAGTCAATGC
GCTGCTCCACAGTCGTGAAATTGAAACTTACTGTCCGCTCAGTCAGCCGGATGCGGAGTTTCTGGAAAATGCACTGCATC
GCTTGGGGTTATCGATTCGCGCCTATCATCGCATCATCAAGGTGGCACGCACCATCGCCGATCTCAATGGCGAAGCACAC
ATTCAGCGCGCGCATCTGGCCGAAGCGCTCGGTTATCGCGCCATGGATCGGTTACTCAAGCAGCTGACCGCCCAGTCCGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

88.757

100

0.888
  comM Vibrio campbellii strain DS40M4

85.404

100

0.854
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.803

0.43