Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NJR02_RS00630 Genome accession   NZ_CP100392
Coordinates   133225..134742 (-) Length   505 a.a.
NCBI ID   WP_052815775.1    Uniprot ID   A0A2L0TRT9
Organism   Aeromonas caviae strain FAHZZU2447     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128225..139742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJR02_RS00605 (NJR02_00605) - 129370..130005 (-) 636 WP_104452105.1 nicotinamidase -
  NJR02_RS00610 (NJR02_00610) - 130080..130730 (+) 651 WP_029314880.1 DNA mismatch repair protein MutT -
  NJR02_RS00615 (NJR02_00615) - 130807..131295 (+) 489 WP_052815772.1 DUF523 domain-containing protein -
  NJR02_RS00620 (NJR02_00620) - 131238..132185 (-) 948 WP_052815773.1 acyltransferase -
  NJR02_RS00625 (NJR02_00625) - 132193..133092 (-) 900 WP_052815774.1 acyltransferase -
  NJR02_RS00630 (NJR02_00630) comM 133225..134742 (-) 1518 WP_052815775.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NJR02_RS00635 (NJR02_00635) ilvG 135127..136773 (+) 1647 WP_104452106.1 acetolactate synthase 2 catalytic subunit -
  NJR02_RS00640 (NJR02_00640) ilvM 136770..137027 (+) 258 WP_052815777.1 acetolactate synthase 2 small subunit -
  NJR02_RS00645 (NJR02_00645) - 137040..137984 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54674.58 Da        Isoelectric Point: 7.4701

>NTDB_id=704903 NJR02_RS00630 WP_052815775.1 133225..134742(-) (comM) [Aeromonas caviae strain FAHZZU2447]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=704903 NJR02_RS00630 WP_052815775.1 133225..134742(-) (comM) [Aeromonas caviae strain FAHZZU2447]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACTGTGGAAGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAGGAGGGGGGCCGT
TTCGACCTGGCCATCGCCATCGGCATTCTCGCAGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGT
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGTGAACAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGTGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAGACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAACTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAGGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCACTATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCACGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.944

99.406

0.636
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.827

100

0.612
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463