Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NKI27_RS19355 Genome accession   NZ_CP100390
Coordinates   3067086..3067406 (+) Length   106 a.a.
NCBI ID   WP_320109425.1    Uniprot ID   -
Organism   Alkalimarinus alittae strain A2M4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3062086..3072406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKI27_RS13870 (NKI27_13840) rfbB 3062885..3063961 (-) 1077 WP_265046632.1 dTDP-glucose 4,6-dehydratase -
  NKI27_RS13875 (NKI27_13845) - 3064006..3065031 (-) 1026 WP_265046633.1 NAD-dependent epimerase/dehydratase family protein -
  NKI27_RS13880 (NKI27_13850) - 3065275..3066684 (-) 1410 WP_265046634.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  NKI27_RS19355 comEA 3067086..3067406 (+) 321 WP_320109425.1 ComEA family DNA-binding protein Machinery gene
  NKI27_RS13890 (NKI27_13860) - 3067484..3068839 (-) 1356 WP_265046635.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  NKI27_RS13895 (NKI27_13865) - 3068987..3070516 (+) 1530 WP_265046636.1 thymidine phosphorylase family protein -
  NKI27_RS13900 (NKI27_13870) - 3070513..3071403 (+) 891 WP_265046637.1 ribose-phosphate pyrophosphokinase -
  NKI27_RS13905 (NKI27_13875) - 3071443..3071613 (-) 171 WP_265046638.1 hypothetical protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11195.06 Da        Isoelectric Point: 10.6193

>NTDB_id=704829 NKI27_RS19355 WP_320109425.1 3067086..3067406(+) (comEA) [Alkalimarinus alittae strain A2M4]
MRIKNFLSLLALVVTFSLSFLPAQNAFAAKVEATHAVSVETGKININSADAHTLASSIKGIGLKKAQAIVDFRESNGPFV
NIQDLVSVKGIGEKTVAKNASLLTVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=704829 NKI27_RS19355 WP_320109425.1 3067086..3067406(+) (comEA) [Alkalimarinus alittae strain A2M4]
ATGCGAATCAAAAATTTTTTATCATTACTTGCTCTAGTTGTTACTTTTAGCCTTTCTTTTTTACCGGCCCAAAATGCTTT
TGCCGCTAAAGTCGAAGCGACCCATGCGGTATCTGTCGAAACAGGGAAGATTAATATTAACAGCGCCGATGCACACACAT
TGGCATCATCGATTAAAGGCATCGGCTTAAAGAAAGCTCAAGCTATTGTAGACTTTAGAGAAAGCAACGGCCCATTCGTT
AACATTCAGGATCTAGTGAGTGTTAAAGGTATTGGCGAGAAGACTGTTGCTAAAAATGCGTCTCTGCTGACGGTTAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

54.839

87.736

0.481
  comEA Vibrio cholerae strain A1552

54.839

87.736

0.481
  comEA Acinetobacter baylyi ADP1

32.558

100

0.396
  comEA Vibrio parahaemolyticus RIMD 2210633

42.553

88.679

0.377
  comE1/comEA Haemophilus influenzae Rd KW20

42.553

88.679

0.377