Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFC98_RS00510 Genome accession   NZ_CP100360
Coordinates   107087..108589 (+) Length   500 a.a.
NCBI ID   WP_254276322.1    Uniprot ID   -
Organism   Halomonas sp. 3H     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102087..113589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFC98_RS00480 - 102216..103142 (-) 927 WP_254276320.1 LysR family transcriptional regulator -
  NFC98_RS00485 - 103304..104080 (+) 777 WP_183330867.1 ferredoxin--NADP reductase -
  NFC98_RS00490 glnK 104273..104611 (-) 339 WP_110069051.1 P-II family nitrogen regulator -
  NFC98_RS00495 - 104765..106015 (-) 1251 WP_254276321.1 ammonium transporter -
  NFC98_RS00500 - 106045..106383 (-) 339 WP_106231078.1 P-II family nitrogen regulator -
  NFC98_RS00505 - 106666..107019 (+) 354 WP_183330869.1 accessory factor UbiK family protein -
  NFC98_RS00510 comM 107087..108589 (+) 1503 WP_254276322.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFC98_RS00515 - 108591..109079 (-) 489 WP_254276323.1 hypothetical protein -
  NFC98_RS00520 - 109076..110062 (-) 987 WP_254276324.1 alpha/beta hydrolase -
  NFC98_RS00525 - 110298..112472 (+) 2175 WP_254276325.1 malate synthase G -
  NFC98_RS00530 - 112651..113064 (+) 414 WP_254276326.1 PaaI family thioesterase -
  NFC98_RS00535 - 113077..113451 (-) 375 WP_254276327.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53124.27 Da        Isoelectric Point: 7.6292

>NTDB_id=704741 NFC98_RS00510 WP_254276322.1 107087..108589(+) (comM) [Halomonas sp. 3H]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPEAAVKESRERVRSALVNAGFDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQVPPEALDGIESAGELALDGRLRPVTGVLPLAMATRRKGRRLIVPRANADEAALAGDLEVLPADHL
LEVVAHLLGQAPIVPHRLASAPEADTSLPDLAEVRGQFQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLSE
EEALEVAAVRSVSGLPLAAGWGRRPFRAPHHTASAVALVGGGSRPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHERRYPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAGEV
GESSAEVRARVVAARARQLARGGLNAHLAGRELDAACDLGAADRAWLAGVLERLKLSARAYHRVLRVALTLADLAGAAKP
EREQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=704741 NFC98_RS00510 WP_254276322.1 107087..108589(+) (comM) [Halomonas sp. 3H]
ATGACGCTGGCCATCGTTCACACCCGGGCCGGGCTCGGCCTGGAGGCTCCCGAGGTGCAGGTCGAGGTGCACCTGGCCAA
CGGCCTGCCGGGCATGACCCTGGTGGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAATGCCGGCTTCGACTACCCCCTGCGACGCATCACCCTCAATCTGGCGCCCGCCGACCTGCCCAAGGAGGGCGGACGC
TTCGACCTGCCCATCGCCCTGGGGCTGCTGGTGGCCTCGGGACAGGTGCCCCCCGAGGCCCTCGACGGCATCGAGAGCGC
CGGCGAGCTGGCGCTGGACGGCCGGCTGCGGCCGGTGACCGGCGTGCTGCCGCTGGCCATGGCCACCCGCCGGAAGGGAC
GGCGCCTGATCGTGCCGCGGGCCAATGCCGATGAGGCGGCCCTGGCCGGCGACCTCGAGGTGCTCCCCGCCGACCACCTG
CTCGAGGTGGTGGCGCACCTGCTGGGCCAGGCGCCCATCGTGCCCCATCGGCTGGCGTCGGCACCGGAGGCCGACACCTC
GCTGCCCGACCTCGCCGAGGTCAGGGGACAGTTCCAGGCCCGCCGGGCCCTGGAGGTCGCCGCCGCAGGCGGCCACAATC
TGCTGTTCGCCGGCCCGCCTGGCACCGGCAAGACCATGCTGGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTCTCCGAG
GAGGAGGCGCTGGAGGTGGCGGCGGTGCGGTCGGTGAGCGGCCTGCCCCTGGCGGCCGGGTGGGGGCGGCGCCCCTTCCG
CGCGCCGCACCATACCGCCAGCGCCGTGGCGCTGGTAGGCGGTGGCTCCAGGCCGCGCCCCGGGGAAATCTCGCTGGCCC
ACCACGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCTCTCGCCACGTGCTGGAGGTGATGCGCGAGCCCATGGAGTCG
GGGCAGATCCATATCGCCCGGGCCAGCCACGAGCGTCGCTATCCGGCCCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGCGGCCACCTCGGCGATCCTCGCCAGGCCTGCCACTGCACGGCCGCCCAGATCCAGCGCTACCAGGCGCGCCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCAGGTTGAAGTGCCGGCGCTGCCGCCGGAGCAGCTCACCGCCGGGGAGGTC
GGCGAGTCATCGGCCGAGGTGCGGGCCCGGGTGGTGGCGGCGCGGGCGCGTCAGCTGGCGCGCGGGGGGCTGAATGCCCA
CCTGGCGGGGCGGGAGCTGGACGCCGCCTGCGACCTGGGGGCGGCAGACCGGGCCTGGCTGGCCGGCGTGCTGGAGCGGT
TGAAGCTCTCGGCCCGGGCCTACCACCGGGTGCTGCGGGTGGCCCTGACCCTGGCCGACCTGGCAGGGGCGGCAAAGCCG
GAGCGCGAGCAGCTGATCGAGGCGATCGGCTATCGGCAGCTCGATCGTCTGCTCAAGGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.175

100

0.564
  comM Vibrio cholerae strain A1552

55.578

100

0.558
  comM Haemophilus influenzae Rd KW20

53.15

100

0.54
  comM Glaesserella parasuis strain SC1401

52.953

100

0.538
  comM Legionella pneumophila str. Paris

50

100

0.502
  comM Legionella pneumophila strain ERS1305867

50

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.548

100

0.472