Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NHM04_RS12050 Genome accession   NZ_CP100350
Coordinates   2757613..2759103 (-) Length   496 a.a.
NCBI ID   WP_254264041.1    Uniprot ID   A0A9J7A8W9
Organism   Gilvimarinus sp. DA14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752613..2764103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS12035 (NHM04_12035) - 2753016..2753447 (+) 432 WP_254264038.1 cytochrome c5 family protein -
  NHM04_RS12040 (NHM04_12040) rep 2753561..2755570 (-) 2010 WP_254264039.1 DNA helicase Rep -
  NHM04_RS12045 (NHM04_12045) - 2755881..2757635 (+) 1755 WP_254264040.1 bifunctional diguanylate cyclase/phosphodiesterase -
  NHM04_RS12050 (NHM04_12050) comM 2757613..2759103 (-) 1491 WP_254264041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NHM04_RS12055 (NHM04_12055) - 2759175..2759423 (-) 249 WP_254264042.1 accessory factor UbiK family protein -
  NHM04_RS12060 (NHM04_12060) - 2759874..2760212 (+) 339 WP_254264043.1 P-II family nitrogen regulator -
  NHM04_RS12065 (NHM04_12065) - 2760243..2761511 (+) 1269 WP_254264044.1 ammonium transporter -
  NHM04_RS12070 (NHM04_12070) - 2761704..2762042 (+) 339 WP_020210976.1 P-II family nitrogen regulator -
  NHM04_RS12075 (NHM04_12075) - 2762074..2762424 (-) 351 WP_254264045.1 hypothetical protein -
  NHM04_RS12080 (NHM04_12080) - 2762713..2762988 (+) 276 WP_254264046.1 hypothetical protein -
  NHM04_RS12085 (NHM04_12085) - 2762996..2763556 (-) 561 WP_254264047.1 exopolysaccharide biosynthesis protein -
  NHM04_RS12090 (NHM04_12090) - 2763582..2763785 (-) 204 WP_254264048.1 CsbD family protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52930.72 Da        Isoelectric Point: 8.2946

>NTDB_id=704700 NHM04_RS12050 WP_254264041.1 2757613..2759103(-) (comM) [Gilvimarinus sp. DA14]
MSLAIVHTRACLGVEAPPVTVEVHLSNGLPGLAIVGLPETAVKESKDRVRSALLNSHLEFPARRITVNLAPADLPKEGGR
YDLAIAIGILAASGQVPTAGLDHLEFIGELALSGQLRQVKGALPAALACRDAGRCLITAQDNGAEAALAGPQQTLTADNL
LRVCAHLHGREQLPFAQLPPDLAPPTPPELADVRGQEHAKRALEIAASGGHNLLMYGPPGTGKTMLASRLPGILPPIETR
DAMAIAAVYSVSGNQAPAWRQRPFRAPHHTASAPALVGGGSNPRPGEISLAHGGVLFLDELPEFQRQVLEVLREPMESGE
VRIARARAQTCYPARFQLIAAMNPCPCGYFGDNDGRCRCTPDQVQRYRGKISGPLLDRIDLHVPVTAVLPTELHKAPAGE
PSKTVQQRVKQARQRALARQGKSNSELAAQDIQQHCQLSESDEAFLAGAVEKLKLSTRAYHRVLKVARTLADMAACDTIG
RNQLAEALSFRGLDRG

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=704700 NHM04_RS12050 WP_254264041.1 2757613..2759103(-) (comM) [Gilvimarinus sp. DA14]
ATGTCGCTAGCCATTGTTCACACCCGCGCCTGTCTCGGCGTTGAAGCGCCGCCGGTAACGGTAGAAGTTCACCTATCCAA
CGGCCTGCCGGGGCTGGCCATTGTGGGCCTGCCGGAAACGGCGGTGAAGGAAAGCAAAGATCGGGTACGCAGCGCTCTGC
TCAATAGCCATCTGGAGTTTCCCGCCCGCCGTATCACCGTCAATCTGGCGCCGGCCGATTTACCCAAAGAGGGAGGCCGC
TATGATCTCGCCATCGCCATAGGCATTCTCGCCGCCTCTGGGCAGGTACCTACTGCCGGTCTCGATCATCTGGAATTTAT
TGGTGAGCTCGCCTTATCGGGGCAGCTACGCCAGGTAAAAGGTGCTCTACCCGCCGCCCTCGCCTGCCGCGACGCAGGAC
GCTGTCTGATTACGGCCCAAGACAACGGCGCAGAAGCGGCTCTTGCGGGCCCACAGCAAACCCTGACTGCCGATAACTTG
CTGCGCGTGTGCGCTCATTTACACGGGCGCGAGCAGCTGCCCTTTGCCCAGCTGCCTCCAGACCTCGCCCCGCCAACGCC
GCCCGAACTTGCTGATGTGCGCGGCCAGGAACACGCCAAACGGGCTTTGGAGATTGCCGCCAGCGGCGGCCATAATCTGC
TCATGTACGGCCCACCTGGCACGGGTAAAACCATGCTGGCAAGCCGCCTGCCCGGTATTTTGCCGCCCATAGAAACCCGC
GATGCGATGGCCATTGCCGCGGTTTACTCAGTATCCGGCAACCAGGCACCCGCTTGGCGCCAACGCCCATTTCGCGCGCC
CCACCACACGGCTTCGGCTCCGGCGCTGGTAGGCGGCGGCAGTAACCCGCGCCCAGGGGAGATATCTCTGGCCCACGGCG
GCGTGCTTTTTCTGGATGAGCTGCCGGAGTTTCAACGCCAGGTGCTGGAAGTGCTGCGCGAGCCCATGGAAAGCGGCGAA
GTGCGTATTGCCCGCGCCCGCGCGCAAACCTGCTACCCAGCGCGCTTTCAACTTATTGCCGCCATGAACCCCTGCCCCTG
CGGTTACTTTGGTGATAACGATGGCCGCTGTCGCTGCACGCCAGATCAAGTACAGCGCTACCGGGGTAAGATTTCAGGCC
CCCTGCTGGATCGCATTGACCTGCACGTACCGGTTACCGCGGTACTGCCCACCGAATTGCATAAGGCCCCAGCGGGAGAG
CCGAGTAAGACGGTGCAGCAGCGGGTAAAACAGGCCAGACAAAGGGCATTGGCGCGGCAGGGCAAAAGCAATAGCGAGCT
GGCCGCGCAAGACATTCAACAACACTGCCAGCTGAGCGAAAGTGACGAAGCGTTTCTGGCCGGCGCGGTCGAGAAGCTAA
AACTCTCAACCCGCGCCTATCACCGCGTACTTAAAGTCGCCCGCACCCTGGCCGATATGGCCGCCTGCGACACAATCGGG
CGCAACCAGCTGGCCGAAGCGCTTAGTTTCAGAGGCTTGGATCGGGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.912

100

0.563
  comM Vibrio cholerae strain A1552

55.6

100

0.56
  comM Glaesserella parasuis strain SC1401

54.563

100

0.554
  comM Haemophilus influenzae Rd KW20

53.479

100

0.542
  comM Legionella pneumophila str. Paris

52.41

100

0.526
  comM Legionella pneumophila strain ERS1305867

52.41

100

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.452