Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EL335_RS12490 Genome accession   NZ_AP018718
Coordinates   2488539..2490026 (-) Length   495 a.a.
NCBI ID   WP_126447392.1    Uniprot ID   -
Organism   Sulfuricystis multivorans strain J5B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2483539..2495026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL335_RS12470 - 2483751..2484968 (-) 1218 WP_126447384.1 hypothetical protein -
  EL335_RS12475 - 2484947..2486578 (-) 1632 WP_126447386.1 CFI-box-CTERM domain-containing protein -
  EL335_RS12480 - 2486693..2487232 (+) 540 WP_126447388.1 protein disulfide oxidoreductase -
  EL335_RS12485 - 2487243..2488514 (+) 1272 WP_126447390.1 MFS transporter -
  EL335_RS12490 comM 2488539..2490026 (-) 1488 WP_126447392.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EL335_RS12495 - 2490036..2490272 (-) 237 WP_126447394.1 accessory factor UbiK family protein -
  EL335_RS12500 - 2490500..2491294 (+) 795 WP_126447396.1 TorF family putative porin -
  EL335_RS12505 glnK 2491306..2491644 (+) 339 WP_126447398.1 P-II family nitrogen regulator -
  EL335_RS12510 amt 2491656..2493152 (+) 1497 WP_126447400.1 ammonium transporter -
  EL335_RS12515 purU 2493197..2494057 (-) 861 WP_126447402.1 formyltetrahydrofolate deformylase -
  EL335_RS12520 thrH 2494050..2494667 (-) 618 WP_126447404.1 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52578.79 Da        Isoelectric Point: 8.0754

>NTDB_id=70461 EL335_RS12490 WP_126447392.1 2488539..2490026(-) (comM) [Sulfuricystis multivorans strain J5B]
MSLAILKSRALAGLAAPEVAVEVHLANGLPSFTLVGLPEMEVKEARDRVRAAIQNSGFEFPAKRITVNLAPADLPKESGR
FDLPIALGILIASGQLASPRLDDHEFAGELSLSGELRPVRGTLAMCLAAKGNGRAFVLPWACADEAALVKTAIILPARTL
LEVCAHLTGAAPLSPHHSAVRKPPSLAPDLAEVKGQLPAKRALEVAAAGGHSLLMSGPPGSGKSMLAARLPGILPPMTEQ
EALESAAVQSLAGSFDVSRWGVRPFQAPHHSASVPALVGGGGNPQPGEISLAHQGILFLDELPEFERRVLEALREPLETG
FIRVSRAARRAEFPARFQLVAAMNPCPCGYLGDARCRCTPEQIARYRGKLSGPLLDRIDLMIEVPAVSEAELSARATGEP
SASVRERVVAARARQIDRQAKPNALLVPDEIDCHCRPDDAGAALLKQAMQRLDLSARAYHRILKVARSIADLAADEIVRG
PHIAEAIQYRRGLGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=70461 EL335_RS12490 WP_126447392.1 2488539..2490026(-) (comM) [Sulfuricystis multivorans strain J5B]
GTGTCGCTGGCGATCCTGAAAAGCCGTGCGCTGGCGGGGCTGGCCGCGCCCGAGGTCGCGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCTCCTTCACGCTGGTCGGGCTGCCCGAGATGGAAGTCAAGGAAGCGCGCGACCGCGTGCGCGCCGCGATCC
AAAACAGCGGCTTCGAGTTTCCCGCCAAGCGCATCACGGTGAATCTCGCGCCGGCCGATCTGCCGAAGGAATCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATCCTGATCGCATCGGGGCAGCTCGCTTCACCCCGTCTCGATGACCACGAGTTCGC
CGGTGAGCTGTCGCTTTCCGGCGAGCTGCGGCCGGTGCGCGGCACGCTGGCGATGTGCCTGGCCGCGAAGGGGAACGGAC
GCGCCTTCGTGCTGCCCTGGGCTTGTGCCGACGAGGCGGCCCTGGTCAAAACGGCGATCATCCTGCCGGCGCGCACTTTG
CTCGAGGTCTGCGCGCATCTGACGGGCGCCGCACCGCTTTCACCCCACCACAGCGCCGTCCGGAAGCCGCCGAGTCTTGC
ACCCGATCTCGCCGAAGTGAAAGGCCAGCTGCCGGCCAAGCGCGCGCTGGAGGTCGCCGCGGCCGGCGGCCATAGCCTGC
TGATGTCCGGCCCGCCGGGTTCCGGCAAATCGATGCTTGCGGCTCGCCTGCCCGGCATCCTGCCGCCGATGACGGAACAA
GAGGCGCTGGAATCCGCCGCCGTTCAATCGCTTGCTGGCAGTTTCGATGTCAGCCGCTGGGGGGTGCGGCCGTTTCAGGC
GCCGCACCACTCGGCCTCGGTGCCGGCGCTGGTCGGCGGCGGCGGAAATCCGCAACCCGGCGAGATTTCCTTGGCTCATC
AGGGCATTTTGTTTTTGGATGAGCTACCCGAATTCGAGCGGCGCGTGCTCGAAGCCCTGCGCGAGCCGCTCGAGACCGGC
TTCATCCGCGTCTCGCGCGCGGCGCGGCGCGCCGAGTTTCCGGCCCGCTTCCAGCTCGTCGCGGCGATGAATCCTTGCCC
CTGCGGCTATCTTGGTGATGCACGCTGTCGCTGCACGCCCGAGCAGATCGCGCGCTACCGGGGCAAACTCTCCGGCCCGC
TGCTCGACCGCATCGATTTGATGATCGAGGTGCCGGCCGTTTCCGAAGCGGAACTATCCGCGCGCGCCACGGGCGAGCCT
TCCGCGAGCGTGCGCGAGCGCGTCGTCGCGGCGCGAGCGCGGCAGATCGACCGTCAAGCCAAGCCCAATGCATTGCTCGT
CCCAGACGAGATCGATTGCCATTGCCGACCGGATGATGCCGGCGCGGCGCTGCTCAAGCAGGCGATGCAGCGGCTCGACC
TGTCTGCTCGCGCCTATCACCGCATTTTGAAAGTGGCACGCAGCATCGCCGATTTGGCTGCTGATGAGATCGTTCGCGGC
CCGCACATCGCCGAGGCGATCCAGTATCGGCGCGGGCTGGGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.389

99.596

0.562
  comM Vibrio campbellii strain DS40M4

55.578

99.596

0.554
  comM Haemophilus influenzae Rd KW20

54.93

100

0.552
  comM Glaesserella parasuis strain SC1401

52.305

100

0.527
  comM Legionella pneumophila str. Paris

50.598

100

0.513
  comM Legionella pneumophila strain ERS1305867

50.598

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.368

99.798

0.473

Multiple sequence alignment