NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	NKT35_RS10985	Genome accession	NZ_CP100128
Coordinates	2389764..2391278 (+)	Length	504 a.a.
NCBI ID	WP_254301125.1	Uniprot ID	-
Organism	Chromobacterium sp. IIBBL 290-4
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2384764..2396278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NKT35_RS10955 (NKT35_10955)	-	2385229..2385657 (+)	429	WP_254301119.1	ClpXP protease specificity-enhancing factor	-
NKT35_RS10960 (NKT35_10960)	-	2385837..2386802 (+)	966	WP_254293992.1	IS1595 family transposase	-
NKT35_RS10965 (NKT35_10965)	-	2386869..2388179 (-)	1311	WP_305883477.1	ammonium transporter	-
NKT35_RS10970 (NKT35_10970)	glnK	2388208..2388546 (-)	339	WP_071112246.1	P-II family nitrogen regulator	-
NKT35_RS10975 (NKT35_10975)	-	2388860..2389147 (+)	288	WP_254301121.1	accessory factor UbiK family protein	-
NKT35_RS10980 (NKT35_10980)	-	2389296..2389736 (+)	441	WP_254301123.1	GNAT family N-acetyltransferase	-
NKT35_RS10985 (NKT35_10985)	comM	2389764..2391278 (+)	1515	WP_254301125.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
NKT35_RS10990 (NKT35_10990)	-	2391342..2392103 (+)	762	WP_254301127.1	SPOR domain-containing protein	-
NKT35_RS10995 (NKT35_10995)	-	2392137..2392751 (+)	615	WP_254301128.1	thiol:disulfide interchange protein DsbA/DsbL	-
NKT35_RS11005 (NKT35_11005)	-	2393202..2394371 (-)	1170	WP_254301130.1	acyltransferase	-
NKT35_RS11010 (NKT35_11010)	-	2394404..2394628 (-)	225	WP_254301131.1	hypothetical protein	-
NKT35_RS11015 (NKT35_11015)	-	2394690..2394983 (-)	294	WP_254301133.1	hypothetical protein	-
NKT35_RS11020 (NKT35_11020)	cyoA	2395135..2396073 (+)	939	WP_254301134.1	ubiquinol oxidase subunit II	-

Sequence

Protein

Download Length: 504 a.a. Molecular weight: 53772.01 Da Isoelectric Point: 7.7607

                                >NTDB_id=703711 NKT35_RS10985 WP_254301125.1 2389764..2391278(+) (comM) [Chromobacterium sp. IIBBL 290-4]

MSLAILYCRALQGMQAPEVTVEVHLANGLPQFTIVGLPETEVKESRDRVRAAIQTSGFEFPARKITVNLAPADLPKDSGR

FDLPIAIGILLAAGQVKHEDISQFEFAGELALSGALRPVRGALAMACHCHGAGRAFMLPTASAAEAAVLGSAIIHPVATL

AQACACLNGLETMPVCRLAQPAEEAALPLYPDLQDVKGQHLARTALEVAAAGGHSLLLMGPPGTGKSMLASRLPGLLPPL

SEREALESAAVQSLGSQGFAAERWMQRPFRNPHHTCSPAALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREP

LESGVIHIARAARQATFPARFQLVAAMNPCPCGYYGHPSGRCRCTPDQVGRYRGKISGPLLDRIDLQVEVPALSVEELQS

AAPGESSGQVRARVAIARERQLARQGCLNAALQGRQLELQTGCSQEAQAELAAIIHKLGLSARAYHRILRVSRTIADLSG

EEQVNRGHVLQAIQLRRVMQAKTC

Nucleotide

Download Length: 1515 bp

                                >NTDB_id=703711 NKT35_RS10985 WP_254301125.1 2389764..2391278(+) (comM) [Chromobacterium sp. IIBBL 290-4]

ATGTCGCTCGCCATTTTATACTGCCGTGCCCTGCAGGGCATGCAGGCGCCGGAAGTGACCGTAGAAGTGCATCTGGCCAA

TGGGCTGCCGCAATTCACCATCGTCGGTCTGCCCGAAACCGAGGTCAAGGAAAGCCGCGACCGGGTGCGGGCAGCCATCC

AGACCAGCGGCTTCGAATTCCCCGCCCGCAAGATCACCGTCAATCTGGCCCCGGCGGATTTGCCCAAGGATTCCGGCCGT

TTCGATCTGCCCATCGCCATCGGCATTTTGCTGGCGGCTGGGCAGGTAAAACATGAAGACATCTCCCAATTCGAATTCGC

CGGCGAGCTGGCGCTGAGCGGCGCCTTGCGCCCGGTGCGCGGGGCTTTGGCCATGGCCTGTCATTGCCATGGGGCGGGGC

GAGCCTTCATGCTGCCGACGGCCAGCGCGGCGGAGGCCGCGGTGTTGGGGAGCGCGATCATTCATCCCGTGGCGACGCTG

GCGCAAGCATGCGCATGCCTGAATGGCTTGGAGACCATGCCGGTCTGCCGTTTGGCGCAGCCCGCAGAGGAGGCGGCGCT

GCCCTTGTACCCGGATTTGCAGGATGTCAAAGGCCAGCATCTGGCCAGGACCGCATTGGAGGTCGCGGCAGCCGGCGGCC

ATAGCCTGCTGTTGATGGGGCCGCCCGGCACCGGCAAGTCGATGCTGGCCTCTCGGCTGCCGGGGCTGTTGCCGCCGTTG

TCGGAGCGGGAGGCCCTGGAGAGCGCGGCGGTGCAGTCGCTGGGCAGCCAGGGGTTCGCCGCCGAGCGGTGGATGCAGCG

ACCCTTTCGCAATCCGCATCACACCTGCTCGCCCGCGGCCTTGGTGGGAGGCGGCAGCGATCCTAGGCCGGGAGAGATCA

GCTTGGCCCATCACGGGGTGTTGTTTCTTGACGAACTGCCGGAGTTTGATCGCAAAGTTCTGGAGGTGTTGAGGGAACCT

CTGGAGAGCGGCGTGATCCATATCGCTCGCGCGGCCCGTCAGGCCACCTTTCCCGCGCGCTTCCAGTTGGTGGCGGCAAT

GAATCCCTGTCCCTGCGGCTATTACGGCCATCCCTCCGGACGCTGCCGCTGCACGCCGGATCAGGTGGGGCGCTATCGCG

GCAAGATCTCCGGTCCATTGCTGGATCGCATCGATTTGCAGGTGGAGGTGCCGGCTTTGAGCGTGGAGGAGCTGCAATCG

GCGGCGCCGGGCGAGAGCAGCGGGCAGGTCAGGGCGAGGGTGGCGATTGCCAGGGAGAGGCAGTTGGCGCGGCAGGGATG

CTTGAACGCCGCCTTGCAGGGACGGCAGCTGGAGTTGCAAACGGGCTGCAGCCAGGAGGCTCAGGCCGAGCTGGCGGCCA

TAATCCATAAGCTTGGCTTGTCGGCGCGGGCGTATCATCGGATACTGCGGGTTTCGCGCACCATTGCCGACTTATCGGGC

GAAGAGCAAGTGAATCGGGGGCATGTTCTGCAAGCGATTCAACTGCGCCGCGTCATGCAAGCCAAGACTTGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	53.815	98.81	0.532
comM	Vibrio campbellii strain DS40M4	53	99.206	0.526
comM	Haemophilus influenzae Rd KW20	51.497	99.405	0.512
comM	Legionella pneumophila strain ERS1305867	50.593	100	0.508
comM	Legionella pneumophila str. Paris	50.593	100	0.508
comM	Glaesserella parasuis strain SC1401	50.1	99.008	0.496
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.056	100	0.431

Detailed information NTG0703711