Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NHL60_RS00605 Genome accession   NZ_CP099975
Coordinates   122756..124258 (+) Length   500 a.a.
NCBI ID   WP_253447616.1    Uniprot ID   -
Organism   Halomonas sp. Y3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117756..129258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHL60_RS00575 - 117972..118898 (-) 927 WP_253447602.1 LysR family transcriptional regulator -
  NHL60_RS00580 - 119059..119835 (+) 777 WP_253447605.1 ferredoxin--NADP reductase -
  NHL60_RS00585 glnK 119961..120299 (-) 339 WP_110069051.1 P-II family nitrogen regulator -
  NHL60_RS00590 - 120451..121701 (-) 1251 WP_253447608.1 ammonium transporter -
  NHL60_RS00595 - 121729..122067 (-) 339 WP_253447610.1 P-II family nitrogen regulator -
  NHL60_RS00600 - 122346..122687 (+) 342 WP_253447613.1 accessory factor UbiK family protein -
  NHL60_RS00605 comM 122756..124258 (+) 1503 WP_253447616.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NHL60_RS00610 - 124271..124774 (-) 504 WP_253447619.1 hypothetical protein -
  NHL60_RS00615 - 124771..125757 (-) 987 WP_253447623.1 alpha/beta hydrolase -
  NHL60_RS00620 - 125992..128166 (+) 2175 WP_253447626.1 malate synthase G -
  NHL60_RS00625 - 128295..128708 (+) 414 WP_253447629.1 PaaI family thioesterase -
  NHL60_RS00630 - 128715..129095 (-) 381 WP_253447632.1 DUF423 domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53292.65 Da        Isoelectric Point: 8.6622

>NTDB_id=703078 NHL60_RS00605 WP_253447616.1 122756..124258(+) (comM) [Halomonas sp. Y3]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGVTLVGLPETAVKESRERVRSALVNAGFDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLLASGQLPPDALQATESVGELALDGRLRPVHGVLPLAMATRRAGRRLIVPRANADEAALAGDLEVLPADHL
LEVVGHLLGRAPIAPHRLSRPPEASVALPDLAEVRGQHQARRALEVAAAGSHNLLLAGPPGTGKTMLASRLPGILPPLTD
EEALEVAAVRSVSGLPLAAEWGRRPFRSPHHTASAVALVGGGAKPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GRIHIARASHERRYPARFMLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAAAE
SEPSAAVRARVVAARERQLARGALNAHLAGRELEAACGLAAADRAWLAGVLERLKLSARAYHRVLRVALTLADLAGEPKP
AREQLIEAVGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=703078 NHL60_RS00605 WP_253447616.1 122756..124258(+) (comM) [Halomonas sp. Y3]
ATGACGCTGGCGATCGTTCATACCCGTGCGGGCCTCGGCCTCGAGGCCCCCGAGGTCCAGGTGGAGGTCCACCTGGCCAA
CGGCCTGCCGGGGGTGACCCTGGTGGGCCTCCCCGAAACCGCCGTGAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAACGCCGGCTTCGACTACCCCCTGCGTCGCATCACCCTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGCGGGCGC
TTCGACCTGCCCATCGCCCTGGGGCTGCTGCTGGCTTCGGGCCAGCTCCCCCCCGATGCGCTGCAGGCGACCGAAAGCGT
CGGCGAGCTGGCGCTGGATGGTCGCCTGCGCCCGGTTCACGGCGTACTGCCCCTGGCCATGGCCACCCGCCGGGCCGGCC
GGCGACTCATCGTGCCTCGGGCCAACGCCGATGAGGCGGCACTGGCCGGCGATCTCGAGGTGCTCCCCGCCGACCACCTG
CTGGAGGTGGTTGGCCATCTGCTGGGGCGAGCGCCCATTGCGCCGCACCGGCTCTCCCGCCCGCCCGAGGCGTCGGTGGC
GCTCCCCGACCTGGCCGAGGTGCGCGGCCAGCACCAGGCGCGCCGCGCCCTGGAGGTGGCCGCCGCGGGTTCCCACAACC
TGCTGCTGGCCGGCCCTCCCGGCACCGGCAAGACCATGCTGGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTTACCGAT
GAGGAGGCGCTGGAGGTGGCGGCGGTGCGCTCGGTGAGCGGACTGCCCCTGGCCGCGGAGTGGGGCCGCCGCCCCTTCCG
GTCGCCCCATCACACCGCCAGCGCCGTGGCCCTGGTGGGCGGCGGGGCCAAGCCCCGCCCCGGCGAGATCTCGCTGGCCC
ATCACGGGGTGCTCTTCCTCGACGAGCTGCCGGAGTTCTCCCGCCATGTGCTGGAGGTGATGCGCGAGCCCATGGAGTCG
GGGCGGATCCATATCGCCCGGGCCAGCCATGAGCGCCGCTATCCGGCCCGCTTCATGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCCATCTGGGCGATCCGCGCCAGGCCTGCCACTGCACCGCGGCCCAGATCCAGCGCTACCAGGCGCGCCTCT
CGGGGCCGCTGCTCGATCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGCCGCCGGAGCAGCTCACGGCGGCGGCCGAG
AGCGAACCCTCGGCGGCGGTGCGGGCCCGGGTGGTGGCGGCCCGGGAGCGGCAGCTGGCGCGGGGTGCCCTCAATGCCCA
CCTGGCCGGGCGGGAGCTGGAGGCGGCCTGCGGCCTCGCCGCCGCCGATCGCGCCTGGCTGGCCGGTGTGCTGGAGCGGC
TCAAGCTCTCGGCCCGGGCCTACCACCGGGTGCTGCGGGTGGCACTGACCCTGGCGGACCTGGCCGGCGAACCGAAGCCG
GCCCGGGAGCAGCTGATCGAGGCGGTGGGCTACCGCCAGCTGGATCGGCTGCTCAAGGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.378

100

0.556
  comM Vibrio cholerae strain A1552

55.179

100

0.554
  comM Glaesserella parasuis strain SC1401

53.635

100

0.546
  comM Haemophilus influenzae Rd KW20

53.649

100

0.544
  comM Legionella pneumophila str. Paris

49.701

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.701

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.478