Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NKF27_RS00540 Genome accession   NZ_CP099965
Coordinates   118251..119756 (+) Length   501 a.a.
NCBI ID   WP_253554888.1    Uniprot ID   -
Organism   Halomonas sp. DN3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 113251..124756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKF27_RS00510 (NKF27_00510) - 114001..114636 (-) 636 WP_045993905.1 SDR family oxidoreductase -
  NKF27_RS00515 (NKF27_00515) - 114792..115007 (+) 216 WP_045993906.1 DUF3820 family protein -
  NKF27_RS00520 (NKF27_00520) glnK 115181..115519 (-) 339 WP_045993907.1 P-II family nitrogen regulator -
  NKF27_RS00525 (NKF27_00525) - 115709..116959 (-) 1251 WP_253554886.1 ammonium transporter -
  NKF27_RS00530 (NKF27_00530) - 117009..117347 (-) 339 WP_045993909.1 P-II family nitrogen regulator -
  NKF27_RS00535 (NKF27_00535) - 117757..118131 (+) 375 WP_253554887.1 accessory factor UbiK family protein -
  NKF27_RS00540 (NKF27_00540) comM 118251..119756 (+) 1506 WP_253554888.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NKF27_RS00545 (NKF27_00545) - 119865..120401 (-) 537 WP_240184265.1 hypothetical protein -
  NKF27_RS00550 (NKF27_00550) - 120386..121408 (-) 1023 WP_108449478.1 alpha/beta hydrolase -
  NKF27_RS00555 (NKF27_00555) - 121882..124068 (+) 2187 WP_253554889.1 malate synthase G -
  NKF27_RS00560 (NKF27_00560) - 124269..124682 (+) 414 WP_045993913.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53738.06 Da        Isoelectric Point: 7.8521

>NTDB_id=703014 NKF27_RS00540 WP_253554888.1 118251..119756(+) (comM) [Halomonas sp. DN3]
MTLAIIATRAGLGLDAPEVQVEVHLANGLPGMTLVGLPETAVRESRERVRSALATCGLDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQLPAAALEGVECAGELALDGRLRPVTGMLPFAMATRQAGRRLILPEANADEAALVNGLEVLPAAHL
LDVVAHLVGRIPLAAHLPAAPPQDGPAALDLCDVRGQYQARRALEVAAAGGHNLLFAGPPGTGKTLLASRLPGLLPPLGD
DEALEVAAIRSVCALPLSDGFGRRPFRSPHHTASAVSLVGGGSRPRPGEISLAHRGVLFLDELPEFSRQVLEVLREPLES
GEIHIARASHERRFPARFQLVAAMNPCPCGHLGDPRQDCVCTASQIQRYQARLSGPLLDRIDLQVEVPALPVEQLTSHQP
GESTEMVRRRVMAARQRQQQRGTLNAQLAGAALERACALDVAERTWLAQSLERLRLSARAYHRVLRVALTLADLAGRERP
CRDDLIEAIGYRQLDRLLRKG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=703014 NKF27_RS00540 WP_253554888.1 118251..119756(+) (comM) [Halomonas sp. DN3]
ATGACGCTTGCCATCATTGCCACCCGTGCGGGACTGGGGCTGGACGCCCCCGAGGTGCAGGTCGAGGTACACCTGGCCAA
CGGCCTGCCGGGCATGACCCTGGTCGGCCTGCCCGAGACCGCAGTGCGCGAAAGCCGCGAACGGGTGCGCAGCGCCCTCG
CCACCTGCGGCCTCGACTACCCGTTACGCCGTATTACCCTGAATCTTGCTCCCGCCGATCTGCCCAAGGAGGGTGGACGC
TTCGATTTGCCCATCGCGCTGGGTCTGCTGGTGGCTTCCGGTCAGTTGCCCGCCGCCGCACTGGAGGGTGTCGAGTGCGC
CGGCGAACTGGCCCTCGATGGTCGGTTGCGGCCAGTAACCGGCATGCTGCCCTTCGCCATGGCCACCCGTCAGGCCGGGC
GGCGCCTGATTCTGCCCGAGGCCAACGCCGATGAGGCGGCCTTGGTCAACGGCCTGGAGGTGCTGCCGGCGGCACACCTG
CTCGACGTCGTCGCCCACCTGGTCGGGCGCATTCCCCTCGCTGCTCACCTACCCGCCGCACCGCCGCAAGACGGGCCTGC
GGCGCTGGATCTGTGCGATGTGCGTGGCCAGTATCAGGCCCGGCGAGCGCTGGAGGTGGCGGCGGCGGGTGGGCACAACC
TGCTGTTTGCCGGGCCGCCCGGCACCGGCAAGACGTTGCTGGCCAGCCGACTGCCCGGGCTCTTGCCACCGCTTGGCGAT
GACGAGGCGCTGGAGGTAGCGGCGATTCGCTCGGTGTGCGCGCTTCCCCTGTCCGATGGCTTTGGCCGTCGTCCGTTTCG
CTCGCCCCACCACACCGCCAGCGCGGTCTCGCTGGTCGGTGGCGGCTCGCGTCCGCGGCCCGGCGAGATCTCGCTGGCCC
ATCGCGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCAGTCGCCAGGTGCTGGAGGTATTGCGCGAGCCGCTGGAAAGC
GGCGAGATCCATATCGCCAGGGCCAGCCACGAGCGGCGATTTCCTGCTCGTTTTCAACTCGTTGCAGCAATGAATCCTTG
CCCCTGCGGCCATCTGGGTGATCCGCGTCAGGACTGTGTATGCACCGCGTCCCAGATCCAGCGCTATCAGGCGCGCCTGT
CCGGCCCCCTGCTAGATCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGCCGGTGGAACAGTTGACGTCGCATCAGCCG
GGGGAAAGCACCGAGATGGTGCGCCGACGCGTGATGGCGGCGCGTCAGCGTCAGCAGCAGAGGGGGACGCTCAACGCCCA
GCTCGCCGGCGCAGCGCTGGAGCGCGCCTGCGCCCTGGATGTGGCCGAGCGCACCTGGCTGGCGCAGTCGCTTGAGCGCC
TGCGGCTGTCCGCCCGGGCCTACCACCGGGTGCTGCGGGTGGCGCTGACCCTGGCCGACCTGGCCGGGCGCGAACGTCCG
TGCCGTGATGACCTGATCGAGGCCATCGGCTATCGCCAGCTGGATCGGCTGTTGCGCAAGGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.076

100

0.543
  comM Glaesserella parasuis strain SC1401

53.452

100

0.541
  comM Haemophilus influenzae Rd KW20

53.057

100

0.537
  comM Vibrio campbellii strain DS40M4

52.684

100

0.529
  comM Legionella pneumophila str. Paris

48.394

99.401

0.481
  comM Legionella pneumophila strain ERS1305867

48.394

99.401

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

99.8

0.461