Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NHN79_RS01730 Genome accession   NZ_CP099962
Coordinates   369352..371502 (+) Length   716 a.a.
NCBI ID   WP_076669846.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain DM083     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 364352..376502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN79_RS01695 (NHN79_01695) - 364427..365173 (+) 747 WP_063487605.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01700 (NHN79_01700) - 365305..365454 (+) 150 WP_003643807.1 hypothetical protein -
  NHN79_RS01705 (NHN79_01705) - 365468..366808 (+) 1341 WP_003643808.1 GHKL domain-containing protein -
  NHN79_RS01710 (NHN79_01710) - 366809..367552 (+) 744 WP_063487604.1 response regulator transcription factor -
  NHN79_RS01715 (NHN79_01715) - 367857..368357 (-) 501 WP_225351141.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01720 (NHN79_01720) plnF 368732..368890 (-) 159 WP_003643811.1 two-peptide bacteriocin plantaricin EF subunit PlnF -
  NHN79_RS01725 (NHN79_01725) plnE 368915..369085 (-) 171 WP_003641985.1 two-peptide bacteriocin plantaricin EF subunit PlnE -
  NHN79_RS01730 (NHN79_01730) comA 369352..371502 (+) 2151 WP_076669846.1 peptide cleavage/export ABC transporter Regulator
  NHN79_RS01735 (NHN79_01735) - 371518..372894 (+) 1377 WP_062688861.1 HlyD family secretion protein -
  NHN79_RS01740 (NHN79_01740) - 372984..373673 (+) 690 WP_063487601.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01745 (NHN79_01745) - 373740..373877 (+) 138 WP_236720747.1 hypothetical protein -
  NHN79_RS01750 (NHN79_01750) - 373943..374398 (+) 456 WP_253230343.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01755 (NHN79_01755) - 374485..375165 (+) 681 WP_003641991.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01760 (NHN79_01760) - 375336..375935 (+) 600 WP_226319714.1 CPBP family intramembrane glutamic endopeptidase -
  NHN79_RS01765 (NHN79_01765) - 376073..376276 (+) 204 WP_027821496.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 79996.67 Da        Isoelectric Point: 6.5571

>NTDB_id=702989 NHN79_RS01730 WP_076669846.1 369352..371502(+) (comA) [Lactiplantibacillus plantarum strain DM083]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLDFETKAIQADMSLFEVQDLPL
PFIVHVTKNGDLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVAIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKVDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGELMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEVYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=702989 NHN79_RS01730 WP_076669846.1 369352..371502(+) (comA) [Lactiplantibacillus plantarum strain DM083]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCGACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGATTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGAGGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGGATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACACATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCCAATAATATGCACAGTACATTGGCAGTGGTGGCCATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTTTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCGAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAGAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAGTTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTAGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGAGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAGTGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAGGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAACGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTC
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATCGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(5-140)

ABC transporter transmembrane region (ABC_membrane)

(166-436)

ABC transporter (ABC_tran)

(498-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

58.626

99.581

0.584
  comA Streptococcus pneumoniae Rx1

58.345

99.581

0.581
  comA Streptococcus pneumoniae D39

58.345

99.581

0.581
  comA Streptococcus pneumoniae R6

58.345

99.581

0.581
  comA Streptococcus pneumoniae TIGR4

58.205

99.581

0.58
  comA Streptococcus mitis SK321

58.065

99.581

0.578
  comA Streptococcus gordonii str. Challis substr. CH1

56.964

100

0.571
  comA/nlmT Streptococcus mutans UA159

54.318

100

0.545