Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NI383_RS21500 Genome accession   NZ_CP099955
Coordinates   2873327..2873857 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2868327..2878857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS21480 (NI383_21635) - 2868651..2868980 (-) 330 WP_315868327.1 MSHA biogenesis protein MshK -
  NI383_RS21485 (NI383_21640) gspM 2868973..2869623 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  NI383_RS21490 (NI383_21645) - 2869620..2871065 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  NI383_RS21495 (NI383_21650) csrD 2871077..2873086 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  NI383_RS21500 (NI383_21655) ssb 2873327..2873857 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI383_RS21505 (NI383_21660) qstR 2874136..2874780 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI383_RS21510 (NI383_21665) galU 2875038..2875910 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=702902 NI383_RS21500 WP_005466625.1 2873327..2873857(-) (ssb) [Vibrio parahaemolyticus strain Isc4A]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=702902 NI383_RS21500 WP_005466625.1 2873327..2873857(-) (ssb) [Vibrio parahaemolyticus strain Isc4A]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483