Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI383_RS21505 Genome accession   NZ_CP099955
Coordinates   2874136..2874780 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2869136..2879780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS21490 (NI383_21645) - 2869620..2871065 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  NI383_RS21495 (NI383_21650) csrD 2871077..2873086 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  NI383_RS21500 (NI383_21655) ssb 2873327..2873857 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI383_RS21505 (NI383_21660) qstR 2874136..2874780 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI383_RS21510 (NI383_21665) galU 2875038..2875910 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI383_RS21515 (NI383_21670) uvrA 2876048..2878870 (+) 2823 WP_025547407.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=702903 NI383_RS21505 WP_005480993.1 2874136..2874780(+) (qstR) [Vibrio parahaemolyticus strain Isc4A]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702903 NI383_RS21505 WP_005480993.1 2874136..2874780(+) (qstR) [Vibrio parahaemolyticus strain Isc4A]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACCCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATCGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523