Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NI391_RS15355 Genome accession   NZ_CP099951
Coordinates   3339943..3341466 (-) Length   507 a.a.
NCBI ID   WP_315867629.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc25B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3334943..3346466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI391_RS15335 (NI391_15345) - 3336234..3337220 (+) 987 WP_005379037.1 serine/threonine protein kinase -
  NI391_RS15340 (NI391_15350) - 3337255..3337857 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  NI391_RS15345 (NI391_15355) - 3337904..3338781 (-) 878 Protein_2917 acyltransferase -
  NI391_RS15350 (NI391_15360) - 3338931..3339887 (+) 957 WP_005379034.1 DUF2860 domain-containing protein -
  NI391_RS15355 (NI391_15365) comM 3339943..3341466 (-) 1524 WP_315867629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NI391_RS15360 (NI391_15370) ilvG 3341932..3343578 (+) 1647 WP_053350673.1 acetolactate synthase 2 catalytic subunit -
  NI391_RS15365 (NI391_15375) ilvM 3343590..3343874 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  NI391_RS15370 (NI391_15380) ilvE 3343887..3344825 (+) 939 WP_005378953.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54964.07 Da        Isoelectric Point: 8.7824

>NTDB_id=702862 NI391_RS15355 WP_315867629.1 3339943..3341466(-) (comM) [Vibrio alginolyticus strain Isc25B]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKALVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=702862 NI391_RS15355 WP_315867629.1 3339943..3341466(-) (comM) [Vibrio alginolyticus strain Isc25B]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGGCGT
TTTGATCTTCCTATTGCATTGGGAATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCGTTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGAGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGTTTCCAATTAGTCGGAGCCTTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCTTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
GTTTAGGGCTCTCGATTCGTGCATATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCCGAGGCGCTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.483

100

0.655
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.803

0.432