Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NI376_RS08495 Genome accession   NZ_CP099943
Coordinates   1954743..1956263 (+) Length   506 a.a.
NCBI ID   WP_308374660.1    Uniprot ID   -
Organism   Pseudoalteromonas piscicida strain BM7A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949743..1961263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI376_RS08490 (NI376_08465) - 1954113..1954725 (+) 613 Protein_1637 trimeric intracellular cation channel family protein -
  NI376_RS08495 (NI376_08470) comM 1954743..1956263 (+) 1521 WP_308374660.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NI376_RS08500 (NI376_08475) - 1956307..1957002 (-) 696 WP_017219015.1 response regulator transcription factor -
  NI376_RS08505 (NI376_08480) - 1957228..1959681 (-) 2454 WP_308374661.1 prolyl oligopeptidase family serine peptidase -
  NI376_RS08510 (NI376_08485) - 1959848..1960975 (+) 1128 WP_308374662.1 hemolysin family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54716.79 Da        Isoelectric Point: 8.3175

>NTDB_id=702764 NI376_RS08495 WP_308374660.1 1954743..1956263(+) (comM) [Pseudoalteromonas piscicida strain BM7A]
MSLARVFTRAQVGITAPEVIVEVHLSNGLPAFSIVGLPETSVKEAKERVRSALVNAGFLFPEQRITVNLAPADLPKDGGR
FDFAIALGVLVASGQLDSHAIADKEFYGELALNGELRTVTAILPSVIAAAKEGRTAYLPIGNDAVASLAADANRVAISCL
RTAWLGLSGQQSLRFNQLYPDNLNIEASGGSLLDMAEVKGQEGAKRVLEIAAAGGHNVLFLGPPGTGKSMLAQRLPTIMP
LMTDNQALETASIYSILGKTISQSNWKTRPFRAPHHTCSAVALVGGSSNPKPGEISLSNNGVLFLDELPEFDRKVLDSLR
EPMETGMVTISRAARQVDYPANFQLIAALNPSPTGCYTDKRASPDQVLRYLAKISGPFLDRIDLQVELPRLKTEELQSQS
DGESSATIRARVEQAYKIALARQGKCNDQLSVKELNHLCYLADAERLFLAKAAEKLKLSPRSYHRIIKVARTIADLSSTP
NIGLSHLKEALSYRALERLLAQLTQY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702764 NI376_RS08495 WP_308374660.1 1954743..1956263(+) (comM) [Pseudoalteromonas piscicida strain BM7A]
ATGTCTTTAGCAAGAGTCTTCACTCGAGCACAAGTTGGTATTACCGCACCCGAGGTAATTGTTGAGGTACACCTTAGTAA
TGGTTTACCTGCCTTTAGTATTGTTGGGTTACCCGAAACATCAGTTAAAGAAGCCAAAGAGCGCGTCCGTAGTGCCCTTG
TTAATGCTGGCTTTTTATTTCCAGAACAGCGTATCACAGTAAACTTAGCACCAGCAGATCTACCCAAAGACGGTGGCCGC
TTTGACTTTGCAATCGCACTCGGTGTTCTCGTCGCATCAGGACAGTTAGATAGCCATGCTATTGCTGATAAAGAGTTTTA
TGGTGAGCTTGCGTTAAATGGTGAGCTGAGGACGGTCACTGCGATTTTGCCATCTGTTATTGCAGCAGCGAAGGAGGGGA
GAACTGCTTACCTACCAATTGGTAACGATGCAGTTGCGAGCCTCGCCGCTGATGCCAATCGTGTTGCTATAAGCTGCTTG
CGTACAGCATGGTTAGGCTTAAGCGGCCAGCAATCACTTAGGTTTAATCAACTCTACCCAGATAATTTAAATATTGAAGC
TTCAGGTGGGAGCTTGCTGGATATGGCTGAGGTGAAAGGACAAGAGGGAGCGAAGCGAGTGCTAGAAATAGCCGCGGCCG
GTGGGCATAATGTTTTATTTCTTGGTCCACCCGGCACTGGAAAATCGATGCTTGCTCAGCGTTTACCCACGATAATGCCA
CTAATGACGGATAATCAGGCGTTAGAAACGGCTTCTATCTATTCCATACTGGGAAAAACAATCAGCCAATCAAACTGGAA
AACAAGGCCTTTTAGAGCTCCACATCATACTTGCTCTGCGGTAGCCTTGGTTGGAGGCTCATCGAACCCTAAGCCTGGGG
AGATATCATTGTCAAATAATGGCGTTCTATTTTTGGACGAATTACCAGAGTTTGATAGAAAAGTACTGGACTCATTACGT
GAGCCGATGGAAACGGGCATGGTAACGATTTCGCGTGCAGCTCGACAAGTTGATTACCCTGCAAACTTTCAACTGATTGC
AGCATTAAACCCCAGTCCTACAGGTTGTTACACTGACAAAAGAGCCTCTCCAGATCAGGTATTGCGCTATTTGGCTAAGA
TTTCAGGTCCATTTTTAGACCGAATAGATCTACAGGTAGAATTACCTCGTCTAAAAACAGAAGAGCTACAATCCCAGAGT
GATGGAGAGTCTAGCGCGACAATAAGGGCTAGGGTGGAGCAGGCCTATAAAATAGCTTTAGCACGTCAGGGAAAATGTAA
CGACCAACTGAGTGTAAAAGAGCTAAATCATCTTTGCTATCTTGCTGATGCTGAGCGTTTATTTCTAGCAAAGGCAGCTG
AAAAACTAAAGCTATCACCACGTTCATATCATCGAATAATCAAGGTTGCACGTACCATTGCAGATCTGAGCTCTACACCT
AATATTGGCTTATCACATTTAAAGGAAGCGCTTAGTTATCGCGCGTTGGAGAGGTTGTTAGCTCAGTTAACACAGTATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.846

100

0.54
  comM Haemophilus influenzae Rd KW20

53.846

100

0.54
  comM Glaesserella parasuis strain SC1401

52.849

100

0.532
  comM Vibrio cholerae strain A1552

52.86

100

0.53
  comM Legionella pneumophila str. Paris

50.398

99.209

0.5
  comM Legionella pneumophila strain ERS1305867

50.398

99.209

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.665

100

0.443