Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NI380_RS01830 Genome accession   NZ_CP099934
Coordinates   390042..390572 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain BM26A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385042..395572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS01820 (NI380_01820) galU 387989..388861 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI380_RS01825 (NI380_01825) qstR 389119..389763 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI380_RS01830 (NI380_01830) ssb 390042..390572 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI380_RS01835 (NI380_01835) - 390681..392069 (+) 1389 WP_308386308.1 site-specific integrase -
  NI380_RS01840 (NI380_01840) - 392075..393211 (+) 1137 WP_308386309.1 site-specific integrase -
  NI380_RS01845 (NI380_01845) - 393244..393627 (+) 384 WP_308386310.1 hypothetical protein -
  NI380_RS01850 (NI380_01850) - 393620..395128 (+) 1509 WP_308386311.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=702715 NI380_RS01830 WP_005466625.1 390042..390572(+) (ssb) [Vibrio parahaemolyticus strain BM26A]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=702715 NI380_RS01830 WP_005466625.1 390042..390572(+) (ssb) [Vibrio parahaemolyticus strain BM26A]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483