Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI380_RS01825 Genome accession   NZ_CP099934
Coordinates   389119..389763 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain BM26A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 384119..394763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS01815 (NI380_01815) uvrA 385029..387851 (-) 2823 WP_005490537.1 excinuclease ABC subunit UvrA -
  NI380_RS01820 (NI380_01820) galU 387989..388861 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI380_RS01825 (NI380_01825) qstR 389119..389763 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI380_RS01830 (NI380_01830) ssb 390042..390572 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI380_RS01835 (NI380_01835) - 390681..392069 (+) 1389 WP_308386308.1 site-specific integrase -
  NI380_RS01840 (NI380_01840) - 392075..393211 (+) 1137 WP_308386309.1 site-specific integrase -
  NI380_RS01845 (NI380_01845) - 393244..393627 (+) 384 WP_308386310.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=702714 NI380_RS01825 WP_005480993.1 389119..389763(-) (qstR) [Vibrio parahaemolyticus strain BM26A]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702714 NI380_RS01825 WP_005480993.1 389119..389763(-) (qstR) [Vibrio parahaemolyticus strain BM26A]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACCCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523