Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DOM77_RS10590 Genome accession   NZ_AP018676
Coordinates   2053831..2054253 (-) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain P01D0000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2048831..2059253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM77_RS10570 cysE 2048835..2049593 (-) 759 WP_014667432.1 serine O-acetyltransferase -
  DOM77_RS10575 speA 2049607..2051457 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  DOM77_RS10580 ybeY 2051582..2052247 (+) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  DOM77_RS11125 - 2052910..2053152 (+) 243 WP_133252118.1 hypothetical protein -
  DOM77_RS10585 - 2053090..2053731 (-) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  DOM77_RS10590 dprB 2053831..2054253 (-) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  DOM77_RS10595 dprA 2054253..2055038 (-) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  DOM77_RS10600 - 2055075..2056157 (-) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  DOM77_RS10605 minE 2056158..2056409 (-) 252 WP_002955975.1 cell division topological specificity factor MinE -
  DOM77_RS10610 minD 2056406..2057221 (-) 816 WP_014667436.1 septum site-determining protein MinD -
  DOM77_RS10615 - 2057288..2057839 (-) 552 WP_002955977.1 hypothetical protein -
  DOM77_RS10620 - 2057839..2058753 (-) 915 WP_002955978.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=70260 DOM77_RS10590 WP_002955972.1 2053831..2054253(-) (dprB) [Helicobacter cinaedi strain P01D0000]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=70260 DOM77_RS10590 WP_002955972.1 2053831..2054253(-) (dprB) [Helicobacter cinaedi strain P01D0000]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493

Multiple sequence alignment