Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NI389_RS08055 Genome accession   NZ_CP099917
Coordinates   1745746..1747251 (-) Length   501 a.a.
NCBI ID   WP_308362359.1    Uniprot ID   -
Organism   Pseudoalteromonas xiamenensis strain PSDB     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1740746..1752251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI389_RS08035 (NI389_08020) - 1740872..1742080 (+) 1209 WP_308362355.1 EAL domain-containing response regulator -
  NI389_RS21140 - 1742280..1744735 (+) 2456 Protein_1569 prolyl oligopeptidase family serine peptidase -
  NI389_RS08050 (NI389_08035) - 1745044..1745754 (+) 711 WP_308362358.1 response regulator transcription factor -
  NI389_RS08055 (NI389_08040) comM 1745746..1747251 (-) 1506 WP_308362359.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NI389_RS08060 (NI389_08045) - 1747288..1747917 (-) 630 WP_308362360.1 trimeric intracellular cation channel family protein -
  NI389_RS08065 (NI389_08050) - 1748190..1748705 (-) 516 WP_308362361.1 DUF2489 domain-containing protein -
  NI389_RS08070 (NI389_08055) yihI 1748705..1749295 (-) 591 WP_308362362.1 Der GTPase-activating protein YihI -
  NI389_RS08075 (NI389_08060) - 1749327..1749965 (-) 639 WP_308362364.1 class I SAM-dependent methyltransferase -
  NI389_RS08080 (NI389_08065) - 1750752..1751384 (-) 633 WP_308362366.1 c-type cytochrome -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54876.12 Da        Isoelectric Point: 8.3772

>NTDB_id=702527 NI389_RS08055 WP_308362359.1 1745746..1747251(-) (comM) [Pseudoalteromonas xiamenensis strain PSDB]
MSLARVLTRAQVGVRAPLVQVEVHLSNGLPAFQIVGLPETSVKEAKERVRSALTNAHFSFPDTRITVNLAPADLPKEGGR
FDLAIAIGILVASGQLPDTVTNQAEFFGELALNGELRPVHAILPSVIAASQEKHHCFIPLLNDPMASLASHSERYAVDSL
QSLWRFVQGEATAQVNAVYHTEVEQLSMDVDFSEVKGQAAAKRVLEIAAAGGHNVLFLGPPGTGKSMLAQRFPSIMPLMS
EAQALESAAVHSLMGHAFEPKRWRIRPFRSPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFDRKVLDSLREPM
ETGVVTISRAARQVDFPARFQLVAALNPSPTGHHTDKRATPDQVLRYLAKISGPFVDRIDLQIELPKLSSIELMSSCQAE
SSAVIRKRVQAAFDFAQQRQSKTNALLGSKEVERFCHLNSECKAYMSKAMEKLNLSPRSYHRVLKVARTIADLEQLPVIP
LQAIKEALSYRAFERLLNQLG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=702527 NI389_RS08055 WP_308362359.1 1745746..1747251(-) (comM) [Pseudoalteromonas xiamenensis strain PSDB]
ATGTCATTAGCCAGAGTGTTAACCCGTGCTCAAGTGGGAGTACGGGCGCCACTTGTCCAAGTGGAAGTCCATTTGAGTAA
CGGTTTGCCAGCTTTTCAGATTGTTGGTTTACCGGAAACCTCAGTCAAAGAAGCCAAAGAGCGTGTGAGAAGCGCATTAA
CCAATGCCCACTTTTCATTCCCCGATACTCGTATTACCGTTAATTTAGCTCCAGCTGACCTACCCAAAGAAGGTGGTCGG
TTTGATTTAGCGATAGCCATCGGTATTTTAGTGGCGTCAGGGCAATTGCCAGACACCGTGACCAACCAAGCTGAATTCTT
CGGTGAGTTGGCGTTGAACGGCGAGTTACGGCCTGTGCATGCGATTTTGCCCTCCGTTATCGCCGCCTCACAAGAGAAGC
ACCACTGCTTCATACCTTTATTGAATGATCCGATGGCTAGTCTCGCATCACATTCAGAGCGATATGCGGTTGATTCGCTC
CAATCATTGTGGCGGTTTGTTCAAGGCGAAGCCACGGCACAGGTGAATGCGGTTTATCACACTGAAGTAGAGCAATTGAG
CATGGATGTTGATTTCAGTGAAGTCAAAGGACAGGCCGCGGCGAAGCGCGTCCTCGAAATTGCGGCGGCTGGAGGGCATA
ATGTGCTGTTTCTTGGTCCTCCAGGTACAGGAAAGTCGATGTTAGCGCAGCGTTTTCCTTCAATTATGCCGTTAATGAGT
GAAGCGCAAGCACTTGAGAGTGCGGCTGTACATTCGCTTATGGGGCATGCTTTTGAACCTAAACGATGGCGGATCAGGCC
GTTTCGAAGTCCACATCACACGTGTTCTGCCGTTGCTTTAGTAGGGGGGTCATCGAATCCTAAGCCAGGTGAAATTTCGT
TAGCGCACAACGGCGTACTCTTCTTAGACGAACTTCCTGAGTTTGATCGGAAAGTGTTGGATTCACTTCGCGAACCGATG
GAAACCGGTGTGGTGACCATTTCTAGGGCGGCGAGACAAGTGGACTTTCCAGCCCGTTTTCAATTGGTTGCGGCATTGAA
CCCTAGCCCAACAGGGCATCACACTGATAAAAGAGCGACACCTGACCAAGTATTACGATATTTAGCCAAGATAAGTGGTC
CATTTGTAGACCGGATTGATTTACAGATAGAGTTGCCCAAGTTATCCAGCATTGAACTGATGTCGTCTTGCCAAGCGGAG
AGTAGCGCTGTGATTCGAAAGCGTGTGCAAGCGGCCTTTGATTTTGCACAACAACGGCAAAGTAAAACCAATGCGTTATT
AGGCTCTAAAGAGGTGGAACGTTTTTGTCATTTAAATTCGGAATGCAAAGCCTATATGAGTAAGGCGATGGAGAAATTGA
ATTTGTCGCCTCGTTCTTATCATCGAGTATTGAAAGTCGCGAGGACTATTGCTGATTTAGAGCAATTACCAGTGATACCG
CTACAGGCAATCAAAGAAGCGCTCAGCTATCGGGCTTTTGAGCGCTTACTAAACCAATTAGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.137

100

0.541
  comM Vibrio campbellii strain DS40M4

52.277

100

0.527
  comM Glaesserella parasuis strain SC1401

51.267

100

0.525
  comM Vibrio cholerae strain A1552

51.683

100

0.521
  comM Legionella pneumophila str. Paris

49.296

99.202

0.489
  comM Legionella pneumophila strain ERS1305867

49.296

99.202

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.365

100

0.459