Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NI390_RS01600 Genome accession   NZ_CP099915
Coordinates   333341..333871 (+) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain Isc7A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328341..338871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS01585 (NI390_01585) uvrA 328451..331273 (-) 2823 WP_308413353.1 excinuclease ABC subunit UvrA -
  NI390_RS01590 (NI390_01590) galU 331411..332280 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI390_RS01595 (NI390_01595) qstR 332408..333058 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI390_RS01600 (NI390_01600) ssb 333341..333871 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  NI390_RS01605 (NI390_01605) csrD 334007..336001 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  NI390_RS01610 (NI390_01610) - 336009..337457 (+) 1449 WP_222764240.1 MSHA biogenesis protein MshI -
  NI390_RS01615 (NI390_01615) - 337454..338104 (+) 651 WP_308413354.1 MSHA biogenesis protein MshJ -
  NI390_RS01620 (NI390_01620) - 338130..338408 (+) 279 WP_172465299.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=702470 NI390_RS01600 WP_020332215.1 333341..333871(+) (ssb) [Vibrio fluvialis strain Isc7A]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=702470 NI390_RS01600 WP_020332215.1 333341..333871(+) (ssb) [Vibrio fluvialis strain Isc7A]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489