Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI390_RS01595 Genome accession   NZ_CP099915
Coordinates   332408..333058 (-) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 327408..338058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS01585 (NI390_01585) uvrA 328451..331273 (-) 2823 WP_308413353.1 excinuclease ABC subunit UvrA -
  NI390_RS01590 (NI390_01590) galU 331411..332280 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI390_RS01595 (NI390_01595) qstR 332408..333058 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI390_RS01600 (NI390_01600) ssb 333341..333871 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  NI390_RS01605 (NI390_01605) csrD 334007..336001 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  NI390_RS01610 (NI390_01610) - 336009..337457 (+) 1449 WP_222764240.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=702469 NI390_RS01595 WP_024374534.1 332408..333058(-) (qstR) [Vibrio fluvialis strain Isc7A]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=702469 NI390_RS01595 WP_024374534.1 332408..333058(-) (qstR) [Vibrio fluvialis strain Isc7A]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGGAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTACCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528