Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIY85_RS23325 Genome accession   NZ_CP099912
Coordinates   4712446..4713966 (+) Length   506 a.a.
NCBI ID   WP_256876804.1    Uniprot ID   -
Organism   Escherichia albertii strain 105_1_LWG_A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4707446..4718966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY85_RS23300 (NIY85_23290) ilvE 4709000..4709929 (-) 930 WP_000208522.1 branched-chain-amino-acid transaminase -
  NIY85_RS23305 (NIY85_23295) ilvM 4709949..4710212 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  NIY85_RS23310 (NIY85_23300) ilvG 4710209..4711855 (-) 1647 WP_025238020.1 acetolactate synthase 2 catalytic subunit -
  NIY85_RS23315 (NIY85_23305) ilvX 4711858..4711908 (-) 51 WP_001387183.1 peptide IlvX -
  NIY85_RS23320 (NIY85_23310) ilvL 4711995..4712093 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NIY85_RS23325 (NIY85_23315) comM 4712446..4713966 (+) 1521 WP_256876804.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIY85_RS23330 (NIY85_23320) maoP 4713992..4714330 (-) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIY85_RS23335 (NIY85_23325) hdfR 4714449..4715288 (+) 840 WP_000379226.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55159.33 Da        Isoelectric Point: 8.7486

>NTDB_id=702440 NIY85_RS23325 WP_256876804.1 4712446..4713966(+) (comM) [Escherichia albertii strain 105_1_LWG_A]
MSLSIVHTHAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLISGEGCLIADHL
QTVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702440 NIY85_RS23325 WP_256876804.1 4712446..4713966(+) (comM) [Escherichia albertii strain 105_1_LWG_A]
ATGTCACTATCAATTGTTCATACTCACGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCCTCTGAACAGCTTACAGCCAATAAGTTACATGAATATGAATTAGT
CGGTGAACTGGCGCTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAGTGGCGAAGGATGCCTGATAGCCGATCATCTA
CAAACTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCAATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCACCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAACGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.193

98.419

0.474
  comM Legionella pneumophila strain ERS1305867

48.193

98.419

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441