Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIY90_RS15410 Genome accession   NZ_CP099906
Coordinates   3160440..3161960 (-) Length   506 a.a.
NCBI ID   WP_059242158.1    Uniprot ID   -
Organism   Escherichia albertii strain 121_1_EW_A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3155440..3166960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY90_RS15400 (NIY90_15400) hdfR 3159118..3159957 (-) 840 WP_000379227.1 HTH-type transcriptional regulator HdfR -
  NIY90_RS15405 (NIY90_15405) maoP 3160076..3160414 (+) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIY90_RS15410 (NIY90_15410) comM 3160440..3161960 (-) 1521 WP_059242158.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIY90_RS15415 (NIY90_15415) ilvL 3162313..3162411 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NIY90_RS15420 (NIY90_15420) ilvX 3162498..3162548 (+) 51 WP_001387183.1 peptide IlvX -
  NIY90_RS15425 (NIY90_15425) ilvG 3162551..3164197 (+) 1647 WP_149476909.1 acetolactate synthase 2 catalytic subunit -
  NIY90_RS15430 (NIY90_15430) ilvM 3164194..3164457 (+) 264 WP_137647056.1 acetolactate synthase 2 small subunit -
  NIY90_RS15435 (NIY90_15435) ilvE 3164477..3165406 (+) 930 WP_059271523.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55266.43 Da        Isoelectric Point: 8.4758

>NTDB_id=702370 NIY90_RS15410 WP_059242158.1 3160440..3161960(-) (comM) [Escherichia albertii strain 121_1_EW_A]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLISGEGCLIADHL
QTVCAFLEGKHALERPKPTDAESWIVQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702370 NIY90_RS15410 WP_059242158.1 3160440..3161960(-) (comM) [Escherichia albertii strain 121_1_EW_A]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCCTCTGAACAGCTTACAGCCAATAAGTTACATGAATATGAATTAGT
CGGTGAACTGGCACTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAGTGGCGAAGGGTGCCTGATAGCTGATCATCTA
CAAACTGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAACGTCCTAAACCAACTGATGCTGAATCCTGGATAGTACA
ACATGATCTCAGTGATGTTGTCGGCCAGGAACAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCGATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCACCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAACGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAGGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.769

99.209

0.573
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437