Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP88_RS13480 Genome accession   NZ_CP115291
Coordinates   2840324..2840653 (+) Length   109 a.a.
NCBI ID   WP_073655197.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F003     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835324..2845653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS13465 (PCP88_13460) - 2835969..2836919 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  PCP88_RS13470 (PCP88_13465) - 2836941..2837981 (+) 1041 WP_409936836.1 MraY family glycosyltransferase -
  PCP88_RS13475 (PCP88_13470) - 2838136..2840133 (+) 1998 WP_073655623.1 polysaccharide biosynthesis protein -
  PCP88_RS13480 (PCP88_13475) comEA/comE1 2840324..2840653 (+) 330 WP_073655197.1 ComEA family DNA-binding protein Machinery gene
  PCP88_RS13490 (PCP88_13485) - 2840870..2842066 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP88_RS13495 (PCP88_13490) uvrB 2842254..2844266 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11427.42 Da        Isoelectric Point: 7.8592

>NTDB_id=702295 PCP88_RS13480 WP_073655197.1 2840324..2840653(+) (comEA/comE1) [Pseudomonas aeruginosa strain F003]
MHLIKSALLLILCACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAVHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=702295 PCP88_RS13480 WP_073655197.1 2840324..2840653(+) (comEA/comE1) [Pseudomonas aeruginosa strain F003]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTGCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGTCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

39.423

95.413

0.376
  comEA Vibrio cholerae C6706

36.364

100

0.367
  comEA Vibrio cholerae strain A1552

36.364

100

0.367
  comEA Vibrio parahaemolyticus RIMD 2210633

40

91.743

0.367
  comE1/comEA Haemophilus influenzae Rd KW20

38.095

96.33

0.367