Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIZ17_RS08905 Genome accession   NZ_CP099890
Coordinates   1780471..1781991 (+) Length   506 a.a.
NCBI ID   WP_256880635.1    Uniprot ID   -
Organism   Escherichia albertii strain 205_2_TBG_B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1775471..1786991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ17_RS08880 (NIZ17_08870) ilvE 1777025..1777954 (-) 930 WP_000208522.1 branched-chain-amino-acid transaminase -
  NIZ17_RS08885 (NIZ17_08875) ilvM 1777974..1778237 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  NIZ17_RS08890 (NIZ17_08880) ilvG 1778234..1779880 (-) 1647 WP_256880634.1 acetolactate synthase 2 catalytic subunit -
  NIZ17_RS08895 (NIZ17_08885) ilvX 1779883..1779933 (-) 51 WP_001387183.1 peptide IlvX -
  NIZ17_RS08900 (NIZ17_08890) ilvL 1780020..1780118 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NIZ17_RS08905 (NIZ17_08895) comM 1780471..1781991 (+) 1521 WP_256880635.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIZ17_RS08910 (NIZ17_08900) maoP 1782017..1782355 (-) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIZ17_RS08915 (NIZ17_08905) hdfR 1782474..1783313 (+) 840 WP_000379226.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55294.44 Da        Isoelectric Point: 8.1932

>NTDB_id=702248 NIZ17_RS08905 WP_256880635.1 1780471..1781991(+) (comM) [Escherichia albertii strain 205_2_TBG_B]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLISGEGCLIADHL
QAVCAFLEDKHALERPKPTDAESWIVQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702248 NIZ17_RS08905 WP_256880635.1 1780471..1781991(+) (comM) [Escherichia albertii strain 205_2_TBG_B]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCAATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCCTCTGAACAGCTTACAGCCAATAAGTTACATGAATATGAATTAGT
CGGTGAACTGGCACTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAGTGGCGAAGGGTGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGATAAGCACGCTCTTGAACGTCCTAAACCAACTGATGCCGAATCCTGGATAGTACA
ACATGATCTCAGTGATGTTGTCGGCCAGGAACAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCAATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCACATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTTCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGCC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCGCCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAATGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437