Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIZ19_RS09445 Genome accession   NZ_CP099886
Coordinates   1930922..1932442 (-) Length   506 a.a.
NCBI ID   WP_000059002.1    Uniprot ID   -
Organism   Escherichia albertii strain 222_1_EW_B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1925922..1937442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ19_RS09435 (NIZ19_09435) hdfR 1929600..1930439 (-) 840 WP_256877609.1 HTH-type transcriptional regulator HdfR -
  NIZ19_RS09440 (NIZ19_09440) maoP 1930558..1930896 (+) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIZ19_RS09445 (NIZ19_09445) comM 1930922..1932442 (-) 1521 WP_000059002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIZ19_RS09450 (NIZ19_09450) ilvL 1932795..1932893 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NIZ19_RS09455 (NIZ19_09455) ilvX 1932980..1933030 (+) 51 WP_001387183.1 peptide IlvX -
  NIZ19_RS09460 (NIZ19_09460) ilvG 1933033..1934679 (+) 1647 WP_256877610.1 acetolactate synthase 2 catalytic subunit -
  NIZ19_RS09465 (NIZ19_09465) ilvM 1934676..1934939 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  NIZ19_RS09470 (NIZ19_09470) ilvE 1934959..1935888 (+) 930 WP_256877611.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55212.39 Da        Isoelectric Point: 9.0024

>NTDB_id=702210 NIZ19_RS09445 WP_000059002.1 1930922..1932442(-) (comM) [Escherichia albertii strain 222_1_EW_B]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLISGEGCLIADHL
QTVCAFLEGKHALERPKPTDAVSRALQHDFSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702210 NIZ19_RS09445 WP_000059002.1 1930922..1932442(-) (comM) [Escherichia albertii strain 222_1_EW_B]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCTTCTGAACAGCTTACAGCCAATAAGTTGCATGAATATGAATTAGT
CGGTGAACTGGCGCTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACCGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAGTGGCGAAGGGTGCCTGATAGCCGATCATCTA
CAAACTGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAACGTCCTAAACCAACTGATGCAGTATCCCGGGCACTACA
ACATGATTTCAGTGATGTTGTCGGCCAGGAACAAGGAAAACGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCGATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCACCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAATGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443