Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIZ24_RS22490 Genome accession   NZ_CP099871
Coordinates   4642518..4644038 (+) Length   506 a.a.
NCBI ID   WP_025238021.1    Uniprot ID   A0A7U8ZA36
Organism   Escherichia albertii strain 253_2_EW_B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4637518..4649038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ24_RS22465 (NIZ24_22450) ilvE 4639072..4640001 (-) 930 WP_000208522.1 branched-chain-amino-acid transaminase -
  NIZ24_RS22470 (NIZ24_22455) ilvM 4640021..4640284 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  NIZ24_RS22475 (NIZ24_22460) ilvG 4640281..4641927 (-) 1647 WP_256878109.1 acetolactate synthase 2 catalytic subunit -
  NIZ24_RS22480 (NIZ24_22465) ilvX 4641930..4641980 (-) 51 WP_001387183.1 peptide IlvX -
  NIZ24_RS22485 (NIZ24_22470) ilvL 4642067..4642165 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NIZ24_RS22490 (NIZ24_22475) comM 4642518..4644038 (+) 1521 WP_025238021.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIZ24_RS22495 (NIZ24_22480) maoP 4644064..4644402 (-) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIZ24_RS22500 (NIZ24_22485) hdfR 4644521..4645360 (+) 840 WP_000379226.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55178.37 Da        Isoelectric Point: 9.0024

>NTDB_id=702106 NIZ24_RS22490 WP_025238021.1 4642518..4644038(+) (comM) [Escherichia albertii strain 253_2_EW_B]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLISGEGCLIADHL
QTVCAFLEGKHALERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702106 NIZ24_RS22490 WP_025238021.1 4642518..4644038(+) (comM) [Escherichia albertii strain 253_2_EW_B]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCCTCTGAACAGCTTACAGCCAATAAGTTACATGAATATGAATTAGT
CGGTGAACTGGCGCTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAGTGGCGAAGGATGCCTGATAGCCGATCATCTA
CAAACTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCAATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGCC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCACCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAACGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8ZA36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Vibrio campbellii strain DS40M4

57.769

99.209

0.573
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441