Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NIZ25_RS23225 Genome accession   NZ_CP099868
Coordinates   4800789..4802309 (+) Length   506 a.a.
NCBI ID   WP_044716243.1    Uniprot ID   A0AAX1LU74
Organism   Escherichia albertii strain 254_1_EW_B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4795789..4807309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ25_RS23200 (NIZ25_23180) ilvE 4797343..4798272 (-) 930 WP_000208522.1 branched-chain-amino-acid transaminase -
  NIZ25_RS23205 (NIZ25_23185) ilvM 4798292..4798555 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  NIZ25_RS23210 (NIZ25_23190) ilvG 4798552..4800198 (-) 1647 WP_059224713.1 acetolactate synthase 2 catalytic subunit -
  NIZ25_RS23215 (NIZ25_23195) ilvX 4800201..4800251 (-) 51 WP_001387183.1 peptide IlvX -
  NIZ25_RS23220 (NIZ25_23200) ilvL 4800338..4800436 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NIZ25_RS23225 (NIZ25_23205) comM 4800789..4802309 (+) 1521 WP_044716243.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NIZ25_RS23230 (NIZ25_23210) maoP 4802336..4802674 (-) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  NIZ25_RS23235 (NIZ25_23215) hdfR 4802793..4803632 (+) 840 WP_000379226.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55325.55 Da        Isoelectric Point: 9.0024

>NTDB_id=702084 NIZ25_RS23225 WP_044716243.1 4800789..4802309(+) (comM) [Escherichia albertii strain 254_1_EW_B]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLINGEGCLIADHL
QTVCAFLEGKHALERPKPTDTVFRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNTESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNARLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=702084 NIZ25_RS23225 WP_044716243.1 4800789..4802309(+) (comM) [Escherichia albertii strain 254_1_EW_B]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACGGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCCTCTGAACAGCTTACAGCCAATAAGTTACATGAATATGAATTAGT
CGGTGAACTGGCGCTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAATGGCGAAGGGTGCCTGATAGCCGATCATCTA
CAAACTGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAACGTCCTAAACCAACTGATACAGTATTCCGGGCACTACA
ACATGATCTCAGTGATGTTGTCGGCCAGGAACAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAACGAA
GAGGCGCTGGAGAGTGCCGCAATATTAAGCCTGGTAAATACTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAGAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGACTTTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCACCACCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAACGCCAG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Vibrio cholerae strain A1552

58.964

99.209

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

57.769

99.209

0.573
  comM Legionella pneumophila str. Paris

48.394

98.419

0.476
  comM Legionella pneumophila strain ERS1305867

48.394

98.419

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443