Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NDO72_RS24660 Genome accession   NZ_CP099834
Coordinates   5158207..5159727 (+) Length   506 a.a.
NCBI ID   WP_032454493.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain Y7-3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5153207..5164727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDO72_RS24640 (NDO72_24640) ilvE 5154767..5155696 (-) 930 WP_064155699.1 branched-chain-amino-acid transaminase -
  NDO72_RS24645 (NDO72_24645) ilvM 5155713..5155970 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  NDO72_RS24650 (NDO72_24650) ilvG 5155967..5157613 (-) 1647 WP_253230834.1 acetolactate synthase 2 catalytic subunit -
  NDO72_RS27225 ilvX 5157616..5157669 (-) 54 WP_201281575.1 peptide IlvX -
  NDO72_RS24655 (NDO72_24655) ilvL 5157754..5157852 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NDO72_RS24660 (NDO72_24660) comM 5158207..5159727 (+) 1521 WP_032454493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NDO72_RS24665 (NDO72_24665) - 5159753..5160091 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  NDO72_RS24670 (NDO72_24670) hdfR 5160210..5161031 (+) 822 WP_253230835.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55155.54 Da        Isoelectric Point: 8.4902

>NTDB_id=701870 NDO72_RS24660 WP_032454493.1 5158207..5159727(+) (comM) [Klebsiella quasipneumoniae strain Y7-3]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=701870 NDO72_RS24660 WP_032454493.1 5158207..5159727(+) (comM) [Klebsiella quasipneumoniae strain Y7-3]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACTACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCCAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTACCTAAAGAGGGCGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGCGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTTGCCGAGGCACCCATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCTGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCGCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGGCTCTCTATTCGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453