Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NH234_RS28990 Genome accession   NZ_CP099760
Coordinates   6295902..6297395 (+) Length   497 a.a.
NCBI ID   WP_367255187.1    Uniprot ID   -
Organism   Pseudomonas sp. stari2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6290902..6302395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH234_RS28960 (NH234_28935) glnK 6292190..6292528 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  NH234_RS28965 (NH234_28940) - 6292942..6293202 (+) 261 WP_039765256.1 accessory factor UbiK family protein -
  NH234_RS28970 (NH234_28945) - 6293598..6294125 (+) 528 WP_367255183.1 Bro-N domain-containing protein -
  NH234_RS28975 (NH234_28950) - 6294120..6294389 (-) 270 WP_085731421.1 HigA family addiction module antitoxin -
  NH234_RS28980 (NH234_28955) - 6295169..6295519 (+) 351 WP_367255185.1 hypothetical protein -
  NH234_RS28985 (NH234_28960) - 6295554..6295724 (+) 171 WP_170929585.1 hypothetical protein -
  NH234_RS28990 (NH234_28965) comM 6295902..6297395 (+) 1494 WP_367255187.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NH234_RS28995 (NH234_28970) - 6297767..6298933 (+) 1167 WP_367255189.1 hypothetical protein -
  NH234_RS29000 (NH234_28975) - 6299008..6299556 (+) 549 WP_367255190.1 adenylyl-sulfate kinase -
  NH234_RS29005 (NH234_28980) - 6299553..6300302 (+) 750 WP_367255192.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53086.25 Da        Isoelectric Point: 8.0540

>NTDB_id=701581 NH234_RS28990 WP_367255187.1 6295902..6297395(+) (comM) [Pseudomonas sp. stari2]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAARPYPDLNEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLAE
CEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPTGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPTMKP
GEDSASAAIQVAEARERQQKRQGCANAFLDLPGLRRHCKLSTTDEHWLESACERLTLSLRSAHRLLKVARTLADIEKVDA
ISREHLAEALQYRPSTQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=701581 NH234_RS28990 WP_367255187.1 6295902..6297395(+) (comM) [Pseudomonas sp. stari2]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTCCACCTCGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCCCCGGCGGATCTGCCCAAGGACGGCGGGCGG
TTTGATCTGGCGATTGCGTTGGGGATCCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
CGGTGAGCTGGCGTTGTCCGGCGCAGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCACTGGCGGCACGCAAGGCGGGGC
GGACGTTGATGGTGCCTCGGGCAAATGCCGAAGAGGCATGCCTGGCATCAGGGCTGAAGGTGATCGCGGTGGATCATCTG
CTGGAGGCAGTGGCGCATTTCAATGGGCATACACCGGTCGAACCTTATGTTTCGGACGGGTTGATCCATGCAGCCAGACC
TTATCCCGACTTGAATGAAGTTCAGGGTCAACTGGCAGCCAAGCGCGCGCTGCTGATAGCGGCGGCGGGCGCGCATAATC
TGCTGCTCAGCGGGCCACCGGGAACGGGCAAGACGTTGCTGGCCAGTCGATTGCCGGGGTTGCTTCCGCCTCTGGCCGAG
TGTGAAGCGCTGGAAGTGGCTGCGATTCAATCGGTCGCCAGTGGCGCCCCGCTCACCCACTGGCCGCAACGGCCCTTTCG
CCAACCTCACCATTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAACCTCAGCCCGGCGAAATCACCCTCGCCC
ACCACGGCGTGCTGTTTCTCGACGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTACTGCGCGAACCTCTGGAGTCC
GGGCATATCGTCATCGCGCGCGCGAAAGACCGCGTGCGCTTCCCTGCACGCTTTCAACTGGTTGCGGCAATGAACCCGTG
CCCCTGCGGATATCTGGGCGAGCCAACGGGGCGCTGCTCATGCACCCCGGACATGGTGCAGCGTTATCGCAACAAGCTGT
CGGGGCCGTTGCTGGACCGGATCGATCTGCACCTGACCGTTGCACGGGAAGCCACTGCATTGAACCCGACAATGAAGCCC
GGCGAGGACAGCGCCAGTGCAGCGATTCAGGTCGCCGAAGCCCGGGAGCGACAGCAAAAGCGTCAAGGCTGCGCCAATGC
GTTTCTGGATCTGCCGGGGTTGCGCAGACACTGCAAGTTATCCACAACCGACGAGCACTGGCTGGAGTCAGCGTGTGAGC
GGCTGACCCTCTCGCTGCGTTCGGCACATCGACTGCTCAAGGTTGCGCGGACACTGGCCGATATAGAGAAGGTTGATGCC
ATCTCTCGCGAACATCTGGCCGAAGCGCTTCAGTATCGCCCGTCGACGCAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Vibrio cholerae strain A1552

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

51

100

0.513
  comM Legionella pneumophila strain ERS1305867

51

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.418

100

0.459