Detailed information NTG0701572

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NH234_RS25485
• Genome accession: NZ_CP099760
• Coordinates: 5566832..5567704 (+)
• Length: 290 a.a.
• NCBI ID: WP_085732832.1
• Uniprot ID: -
• Organism: Pseudomonas sp. stari2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5561832..5572704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NH234_RS25460 (NH234_25435)	-	5562128..5562424 (+)	297	WP_085732827.1	DUF2845 domain-containing protein	-
NH234_RS25465 (NH234_25440)	-	5562593..5562949 (-)	357	WP_085732828.1	BON domain-containing protein	-
NH234_RS25470 (NH234_25445)	pilA	5563246..5563683 (-)	438	WP_367254661.1	pilin	Machinery gene
NH234_RS25475 (NH234_25450)	pilB	5563910..5565610 (+)	1701	WP_085732830.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NH234_RS25480 (NH234_25455)	pilC	5565613..5566830 (+)	1218	WP_367254663.1	type II secretion system F family protein	Machinery gene
NH234_RS25485 (NH234_25460)	pilD	5566832..5567704 (+)	873	WP_085732832.1	A24 family peptidase	Machinery gene
NH234_RS25490 (NH234_25465)	coaE	5567701..5568324 (+)	624	WP_085732833.1	dephospho-CoA kinase	-
NH234_RS25495 (NH234_25470)	yacG	5568321..5568521 (+)	201	WP_085712167.1	DNA gyrase inhibitor YacG	-
NH234_RS25500 (NH234_25475)	-	5568528..5568743 (-)	216	WP_367254665.1	hypothetical protein	-
NH234_RS25505 (NH234_25480)	-	5568809..5569498 (-)	690	WP_065261574.1	energy-coupling factor ABC transporter permease	-
NH234_RS25510 (NH234_25485)	-	5569632..5570258 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
NH234_RS25515 (NH234_25490)	-	5570255..5570782 (+)	528	WP_367254666.1	MOSC domain-containing protein	-
NH234_RS25520 (NH234_25495)	-	5570834..5571007 (+)	174	WP_065261571.1	DUF3094 domain-containing protein	-
NH234_RS25525 (NH234_25500)	-	5571074..5572372 (+)	1299	WP_085732836.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32284.68 Da
• Isoelectric Point: 8.2528

>NTDB_id=701572 NH234_RS25485 WP_085732832.1 5566832..5567704(+) (pilD) [Pseudomonas sp. stari2]
MPIDELFALYPLAFVFTALVLGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFGWPACLMIALTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVFGVILLKLRDRKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=701572 NH234_RS25485 WP_085732832.1 5566832..5567704(+) (pilD) [Pseudomonas sp. stari2]
ATGCCCATCGACGAACTTTTCGCCCTCTATCCGCTGGCGTTTGTCTTCACTGCCCTGGTGCTCGGGCTGGTGGTCGGCAG
CTTTCTCAATGTGGTGATCTGGCGTCTGCCGAAGATGCTCGAACGCGAATGGCGCCAGCAGGCCCACGACGTGTTGGGGC
TGCCCGTCGAAACGCCGTTGCCGGTCTACAACCTGATGCTGCCGCACTCGCAGTGCCCACATTGCGCCCACCGCATTCGT
GCGTGGGAAAACATTCCGCTGCTCAGCTACCTGTTTTTGCGCGGCCGTTGCTCGTCTTGCGCAGCGCCGATCAGCAAGCG
TTATCCACTGACCGAACTGGCCTGCGGGCTGCTCTCGGCGTTCATTGCCTGGCATCTGGGTTTTGGCTGGCCGGCTTGCC
TGATGATCGCCCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAGCTGTTGCCCGATGTACTGGTG
CTGCCGTTGCTGTGGCTGGGATTGATCGTCAACAGTTTCGGCCTGTTCGTCTCACTGCACGATGCGTTGTGGGGGGCGGT
GGCTGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAAGACGGCATCGGTCACGGTGATT
TCAAGTTGCTGGCGCTGCTCGGGGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGTCCTCCCTGGTGGGC
GCCGTGTTCGGGGTGATTTTGCTCAAACTGCGTGACCGCAAAACCTCGACGCCGATCCCCTTCGGGCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.255	97.241	0.528
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	48.592	97.931	0.476
pilD	Acinetobacter nosocomialis M2	48.592	97.931	0.476
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455