Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NHU85_RS15730 Genome accession   NZ_CP099739
Coordinates   3440556..3442076 (+) Length   506 a.a.
NCBI ID   WP_302528742.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3435556..3447076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHU85_RS15705 (NHU85_15695) - 3435750..3436679 (-) 930 WP_035607899.1 branched-chain amino acid transaminase -
  NHU85_RS15710 (NHU85_15700) ilvM 3436729..3437019 (-) 291 WP_005290111.1 acetolactate synthase 2 small subunit -
  NHU85_RS15715 (NHU85_15705) ilvG 3437016..3438665 (-) 1650 WP_302528740.1 acetolactate synthase 2 catalytic subunit -
  NHU85_RS15720 (NHU85_15710) - 3438804..3438902 (-) 99 WP_302528741.1 IlvGEDA operon leader peptide -
  NHU85_RS15725 (NHU85_15715) - 3439053..3440267 (-) 1215 WP_035607905.1 MFS transporter -
  NHU85_RS15730 (NHU85_15720) comM 3440556..3442076 (+) 1521 WP_302528742.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NHU85_RS15735 (NHU85_15725) tdh 3442142..3443167 (-) 1026 WP_035607910.1 L-threonine 3-dehydrogenase -
  NHU85_RS15740 (NHU85_15730) kbl 3443177..3444373 (-) 1197 WP_302528743.1 glycine C-acetyltransferase -
  NHU85_RS15745 (NHU85_15735) rfaD 3444680..3445609 (+) 930 WP_035607915.1 ADP-glyceromanno-heptose 6-epimerase -
  NHU85_RS15750 (NHU85_15740) rfaF 3445633..3446709 (+) 1077 WP_035597595.1 ADP-heptose--LPS heptosyltransferase RfaF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54038.00 Da        Isoelectric Point: 9.0512

>NTDB_id=701431 NHU85_RS15730 WP_302528742.1 3440556..3442076(+) (comM) [Edwardsiella tarda strain GT88]
MTLASVYTRAALGMQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAILNSGFQFPAKRITLNLAPADLPKEGGR
YDLPMALALLLAAGQLSSVHAEHQYEFMGELALSGELRPVPGILPAALSATQAGRTLIAPSGNADELGLLPAPRPFIAPS
LLAVCAFLSESATLERPARCLPSNDYAQQGDMADIIGQAQARRALEIAAAGGHNLLLLGPPGTGKTMLAYRLAGILPPMT
SDEALAQAAISSLAYPGSTQTRYGVRPFRAPHHSASMAALIGGGSLPRPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRAQVKVNFPARVQLVAAMNPSNAGFGSSAGGRTTPNQVLRYLSRLSGPLLDRFDLSIDVPLLPAGVLASQRA
TGEDSATLRQRVTTVRDRQYARSGQLNAHLEGAERDRVCRLSTHDAQFLEQALTRLGLSVRAWHRLLKVARTLADMEGVE
TIAQRHLAEALSYRAVDRLLQTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=701431 NHU85_RS15730 WP_302528742.1 3440556..3442076(+) (comM) [Edwardsiella tarda strain GT88]
ATGACACTGGCCAGCGTATACACCCGTGCCGCTCTCGGCATGCAAGCCCCCGAAGTCAGGATCGAGGCACATATCGGCAA
TGGATTGCCGGGTTTTACTCTGGTTGGCCTCCCAGAGACGGCGGTGCGTGAGGCGAAAGATCGAGTGCGTTGTGCCATCC
TAAACAGCGGATTCCAGTTTCCGGCTAAGCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCGAAGGAGGGCGGTCGC
TACGATCTTCCCATGGCACTGGCCCTATTGCTCGCCGCAGGGCAACTCTCCAGCGTGCACGCCGAGCATCAATATGAGTT
TATGGGTGAGCTCGCCCTCTCCGGTGAACTCCGCCCGGTACCCGGTATTCTACCGGCCGCGCTGAGTGCCACACAGGCGG
GGCGAACCTTAATCGCCCCCAGTGGCAACGCCGATGAGCTCGGGCTGTTGCCTGCACCGCGTCCCTTCATCGCCCCATCC
CTACTTGCCGTCTGCGCCTTCCTCAGTGAAAGCGCCACATTGGAAAGACCAGCGCGCTGTCTACCCAGTAACGACTATGC
ACAGCAGGGGGACATGGCTGATATCATCGGCCAAGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCCGCCGGGGGGCATA
ATCTGCTACTGCTTGGACCACCGGGTACCGGTAAAACGATGCTGGCCTATCGCCTAGCGGGGATCCTGCCACCGATGACC
AGCGATGAGGCGTTAGCGCAGGCCGCCATCAGCAGCCTGGCATATCCAGGTTCGACGCAGACACGCTATGGCGTACGCCC
CTTTCGCGCGCCGCACCATAGCGCCTCGATGGCAGCACTGATCGGCGGCGGATCCTTGCCGCGTCCTGGAGAGATCTCTC
TGGCGCATCACGGCGTGCTCTTCCTTGATGAATTAGCCGAGTTCGATCGACGTACCTTAGATGCACTGCGCGAGCCGTTA
GAGTCAGGTGTTGTCCACCTCTCCCGTGCCCAGGTCAAAGTCAACTTTCCCGCCCGCGTACAATTGGTAGCGGCGATGAA
TCCCAGCAATGCGGGATTTGGGAGCAGTGCGGGAGGACGCACCACACCGAATCAGGTGCTGCGCTACCTCTCTCGCCTTT
CTGGGCCGCTGCTCGACCGCTTCGATCTCTCGATTGATGTCCCCCTATTACCCGCGGGAGTATTGGCCAGCCAACGAGCG
ACGGGCGAAGACAGTGCCACACTACGTCAACGCGTTACCACTGTCCGTGATCGGCAGTATGCTCGCAGTGGTCAGTTGAA
TGCTCATCTCGAGGGTGCAGAGCGCGATCGTGTCTGCCGCTTGAGTACACACGATGCACAATTTCTAGAACAGGCCCTGA
CACGCCTCGGTTTATCGGTACGCGCTTGGCACCGGCTGCTCAAGGTCGCTCGTACACTCGCGGACATGGAGGGCGTCGAG
ACTATCGCCCAACGCCATCTGGCTGAAGCGCTGAGCTATCGCGCCGTCGATCGGCTCTTACAGACATTGCAACGGGGATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.046

99.407

0.587
  comM Vibrio campbellii strain DS40M4

57.654

99.407

0.573
  comM Haemophilus influenzae Rd KW20

56.805

100

0.569
  comM Glaesserella parasuis strain SC1401

55.512

100

0.557
  comM Legionella pneumophila str. Paris

47.094

98.617

0.464
  comM Legionella pneumophila strain ERS1305867

47.094

98.617

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433