Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NH461_RS16395 Genome accession   NZ_CP099734
Coordinates   3544489..3546021 (-) Length   510 a.a.
NCBI ID   WP_261601323.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539489..3551021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS16370 (NH461_16330) - 3540412..3540597 (+) 186 WP_261601318.1 hypothetical protein -
  NH461_RS16375 (NH461_16335) - 3540732..3540998 (+) 267 WP_261601319.1 YihD family protein -
  NH461_RS16380 (NH461_16340) ccoG 3541245..3542675 (+) 1431 WP_261601320.1 cytochrome c oxidase accessory protein CcoG -
  NH461_RS16385 (NH461_16345) - 3542772..3543761 (+) 990 WP_261601321.1 serine/threonine protein kinase -
  NH461_RS16390 (NH461_16350) - 3543828..3544430 (+) 603 WP_261601322.1 DsbA family protein -
  NH461_RS16395 (NH461_16355) comM 3544489..3546021 (-) 1533 WP_261601323.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NH461_RS16400 (NH461_16360) ilvG 3546442..3548088 (+) 1647 WP_261601324.1 acetolactate synthase 2 catalytic subunit -
  NH461_RS16405 (NH461_16365) ilvM 3548088..3548336 (+) 249 WP_261601325.1 acetolactate synthase 2 small subunit -
  NH461_RS16410 (NH461_16370) - 3548358..3549302 (+) 945 WP_261601326.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54801.03 Da        Isoelectric Point: 8.8054

>NTDB_id=701410 NH461_RS16395 WP_261601323.1 3544489..3546021(-) (comM) [Photobacterium sp. TY1-4]
MTLAIVHSRASVGVGAPPVTVEVHISNGMPALTLVGLPETTVKEARDRVRSAIVNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPTQSLQDYEFLGELALSGQLRPVKGALPAALAAKRAGRCLVVPDRNGDQVALVGRDCHKSAPDL
LAVCGQLCGQQQLSLSVRQASPPEDNTPVSGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPA
MSIEEALETAAVTSLTRQALHEGNWRRRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGKLSGPLLDRFDMSIEIPALPRGTLAEG
GDRGDPTAVIRERVFRARAAMVDRAGKVNALLSTRELEHHCALARVDADFLETALHQLGLSIRAYHRIIKVARTIADLAG
CAQIERAHLAEALGYRAMDRLMKQLTSQAM

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=701410 NH461_RS16395 WP_261601323.1 3544489..3546021(-) (comM) [Photobacterium sp. TY1-4]
ATGACGTTAGCCATAGTTCACAGCCGCGCCAGTGTGGGTGTCGGTGCCCCACCGGTGACGGTGGAAGTGCATATCAGTAA
CGGGATGCCGGCGCTGACCCTGGTCGGGTTGCCGGAAACCACGGTGAAAGAAGCACGGGATCGGGTGCGAAGTGCCATTG
TGAATGCCAACTTTGAGTTCCCTTCCCGGCGCATTACGGTGAATCTGGCGCCAGCCGATCTGCCCAAGGAAGGCGGCCGG
TTTGATCTGCCGATTGCGCTGGGGATTTTGGCCGCTTCCGGGCAAATTCCGACACAAAGCCTGCAAGATTATGAATTTTT
GGGTGAGTTGGCGCTCTCCGGCCAACTCCGGCCGGTCAAGGGCGCACTGCCGGCAGCCCTGGCGGCCAAGCGGGCCGGAC
GCTGTCTGGTGGTGCCGGATCGCAACGGCGATCAGGTCGCGCTGGTGGGTCGCGACTGCCATAAATCGGCGCCGGATTTG
CTGGCGGTGTGCGGTCAGCTATGCGGTCAACAACAGCTGAGTCTGTCGGTACGCCAGGCCTCACCGCCGGAAGACAACAC
GCCCGTTTCCGGGCGGGATATGCAGGATATTATCGGCCAGCAACAGGGCAAACGGGCGCTGGAAATTGCCGCAGCAGGCG
GGCATAACCTGCTGTTTCTTGGCCCGCCCGGCACCGGGAAAACCATGCTGGCCTCGCGGCTGTGCGATCTGCTGCCGGCG
ATGAGTATTGAGGAGGCGCTGGAGACGGCTGCGGTGACCTCGCTCACCCGGCAGGCCTTGCATGAGGGTAACTGGCGCCG
TCGCCCTTTTCGCACCCCGCACCATTCGAGCTCGATGGCGGCTCTGGTCGGTGGTGGCTCGGTGCCGCGACCGGGGGAGA
TCTCCCTGGCCCATAACGGGATATTGTTTCTCGACGAAATGCCGGAGTTTGAGCGTAAGGTGCTCGACTCGCTGCGCGAG
CCGCTGGAGTCGGGGGAGATAGTGATCTCCCGCGCCACCAGCAAAACCCGCTTCCCGGCCCGCTTTCAGCTGGTGGGTGC
GCTGAACCCCAGTCCGACCGGCTACTATGAAGGCAATCAGGCGCGGACCAACCCGCAGGCGATTTTGCGCTATCTGGGCA
AACTGTCCGGGCCTTTACTGGACCGGTTCGACATGTCGATTGAGATCCCCGCCCTGCCCCGCGGCACATTAGCGGAAGGC
GGTGATCGCGGCGATCCGACGGCGGTGATCCGCGAGCGGGTGTTCCGGGCGCGCGCGGCGATGGTGGATCGCGCCGGGAA
AGTTAACGCGCTGCTCTCGACCCGGGAGCTGGAGCATCACTGCGCCCTGGCGCGGGTTGATGCCGATTTTCTCGAAACCG
CGCTGCACCAGCTCGGTCTGTCGATCCGCGCGTATCACCGCATCATCAAGGTGGCTCGGACGATCGCCGATCTGGCGGGA
TGTGCCCAGATTGAACGGGCCCACCTGGCCGAAGCACTGGGCTACCGGGCCATGGATCGGCTGATGAAGCAACTGACGTC
TCAGGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

78.235

100

0.782
  comM Vibrio cholerae strain A1552

77.756

99.608

0.775
  comM Glaesserella parasuis strain SC1401

63.529

100

0.635
  comM Haemophilus influenzae Rd KW20

62.549

100

0.625
  comM Legionella pneumophila str. Paris

48.703

98.235

0.478
  comM Legionella pneumophila strain ERS1305867

48.703

98.235

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

99.804

0.431