Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NH461_RS11755 Genome accession   NZ_CP099734
Coordinates   2511081..2511371 (-) Length   96 a.a.
NCBI ID   WP_261600534.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2506081..2516371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS11730 (NH461_11705) - 2506133..2507347 (+) 1215 WP_261600529.1 pyridoxal phosphate-dependent aminotransferase -
  NH461_RS11735 (NH461_11710) yfbR 2507528..2508112 (+) 585 WP_261600530.1 5'-deoxynucleotidase -
  NH461_RS11740 (NH461_11715) - 2508112..2509479 (+) 1368 WP_261600531.1 anti-phage deoxyguanosine triphosphatase -
  NH461_RS11745 (NH461_11720) - 2509642..2510253 (-) 612 WP_261600532.1 tRNA-uridine aminocarboxypropyltransferase -
  NH461_RS11750 (NH461_11725) rrtA 2510264..2510830 (+) 567 WP_261600533.1 rhombosortase -
  NH461_RS11755 (NH461_11730) comEA 2511081..2511371 (-) 291 WP_261600534.1 ComEA family DNA-binding protein Machinery gene
  NH461_RS11760 (NH461_11735) ppiD 2511517..2513406 (-) 1890 WP_261600535.1 peptidylprolyl isomerase -
  NH461_RS11765 (NH461_11740) hupB 2513624..2513896 (-) 273 WP_261600536.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10322.93 Da        Isoelectric Point: 5.5892

>NTDB_id=701404 NH461_RS11755 WP_261600534.1 2511081..2511371(-) (comEA) [Photobacterium sp. TY1-4]
MKKLIHSLMLALTLCLSPFAALAEQDPHEGIAITVNINTANAEELDTLLIGVGPDKAAKIIAYREAHGNFTEVEDLTKVN
GIGTATVEKNRGRIQL

Nucleotide


Download         Length: 291 bp        

>NTDB_id=701404 NH461_RS11755 WP_261600534.1 2511081..2511371(-) (comEA) [Photobacterium sp. TY1-4]
ATGAAAAAACTGATACACAGCCTGATGCTTGCTTTGACACTTTGTCTGTCCCCATTTGCTGCCCTGGCCGAACAGGATCC
CCATGAAGGGATCGCGATTACAGTCAATATCAATACTGCCAATGCGGAAGAGCTCGATACCCTGCTGATTGGGGTCGGTC
CGGATAAGGCGGCGAAGATCATTGCCTATCGCGAAGCACACGGGAACTTTACCGAGGTGGAGGACTTAACCAAGGTCAAC
GGCATTGGAACGGCGACGGTTGAGAAAAACCGCGGTCGGATTCAATTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

53.465

100

0.562
  comEA Vibrio cholerae strain A1552

53.465

100

0.562
  comEA Vibrio parahaemolyticus RIMD 2210633

54.444

93.75

0.51
  comEA Vibrio campbellii strain DS40M4

52.747

94.792

0.5
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.667

100

0.417