Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NH673_RS06550 Genome accession   NZ_CP099727
Coordinates   1449884..1450564 (+) Length   226 a.a.
NCBI ID   WP_269058012.1    Uniprot ID   -
Organism   Pseudomonas putida strain PCL1760     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1444884..1455564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH673_RS06530 (NH673_06530) - 1444990..1445202 (-) 213 WP_227696588.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  NH673_RS27075 - 1445202..1446422 (-) 1221 WP_080999533.1 TniQ family protein -
  NH673_RS06535 (NH673_06535) - 1446426..1447316 (-) 891 WP_053867762.1 TniB family NTP-binding protein -
  NH673_RS06540 (NH673_06540) - 1447320..1449194 (-) 1875 WP_053867761.1 Mu transposase C-terminal domain-containing protein -
  NH673_RS06545 (NH673_06545) - 1449191..1449856 (-) 666 WP_196365753.1 TnsA endonuclease N-terminal domain-containing protein -
  NH673_RS06550 (NH673_06550) comM 1449884..1450564 (+) 681 WP_269058012.1 ATP-binding protein Machinery gene
  NH673_RS06555 (NH673_06555) - 1450633..1451001 (-) 369 WP_031307593.1 response regulator -
  NH673_RS06560 (NH673_06560) - 1450998..1451990 (-) 993 WP_053867759.1 response regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25178.73 Da        Isoelectric Point: 7.0992

>NTDB_id=701342 NH673_RS06550 WP_269058012.1 1449884..1450564(+) (comM) [Pseudomonas putida strain PCL1760]
MFSFYDVFYSGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLESGEIVIARARDKVRFPARFQLVAAMNPCPCG
YLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCGESSADVAVRVAEARELQHRRQGCANAFLDL
EGLRHHCGLLAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCETIGRAHLAEALQYRPGSS

Nucleotide


Download         Length: 681 bp        

>NTDB_id=701342 NH673_RS06550 WP_269058012.1 1449884..1450564(+) (comM) [Pseudomonas putida strain PCL1760]
ATTTTCTCATTTTACGATGTGTTTTACAGTGGCAGCAGCCGGCCGCAACCTGGTGAAATCACACTCGCCCATCACGGCGT
GTTGTTTCTCGACGAGCTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCAGGTGAAATCG
TGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCAGCGATGAACCCCTGCCCTTGCGGC
TACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGTCCGGGCCACT
GCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGTGAAAGCAGTG
CCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGCTGTGCGAATGCATTTCTCGACCTT
GAAGGTTTAAGGCATCACTGTGGGTTGTTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGCTGACCTTGTC
GCTACGGGCGGCGCACCGGTTGTTGAAGGTGGCACGGACACTGGCGGACCTGGAGGGATGCGAGACGATTGGCCGGGCGC
ACCTGGCCGAGGCCCTGCAGTACCGACCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(11-121)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(130-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.153

98.23

0.522
  comM Glaesserella parasuis strain SC1401

52.968

96.903

0.513
  comM Haemophilus influenzae Rd KW20

53.953

95.133

0.513
  comM Vibrio campbellii strain DS40M4

50.901

98.23

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

50.691

96.018

0.487
  comM Legionella pneumophila str. Paris

47.248

96.46

0.456
  comM Legionella pneumophila strain ERS1305867

47.248

96.46

0.456