Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NHF51_RS19555 Genome accession   NZ_CP099717
Coordinates   4264864..4266378 (+) Length   504 a.a.
NCBI ID   WP_252995238.1    Uniprot ID   A0AAE9MGW2
Organism   Aeromonas encheleia strain SOD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4259864..4271378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF51_RS19540 (NHF51_19540) - 4261644..4262576 (-) 933 WP_218292077.1 branched-chain amino acid transaminase -
  NHF51_RS19545 (NHF51_19545) ilvM 4262589..4262837 (-) 249 WP_033129032.1 acetolactate synthase 2 small subunit -
  NHF51_RS19550 (NHF51_19550) ilvG 4262834..4264480 (-) 1647 WP_252995237.1 acetolactate synthase 2 catalytic subunit -
  NHF51_RS19555 (NHF51_19555) comM 4264864..4266378 (+) 1515 WP_252995238.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NHF51_RS19560 (NHF51_19560) - 4266516..4267415 (+) 900 WP_033129035.1 acyltransferase -
  NHF51_RS19565 (NHF51_19565) - 4267425..4268378 (+) 954 WP_252995239.1 acyltransferase -
  NHF51_RS19570 (NHF51_19570) - 4268324..4268797 (-) 474 WP_252995240.1 DUF523 domain-containing protein -
  NHF51_RS19575 (NHF51_19575) - 4268794..4269120 (-) 327 WP_252995241.1 hypothetical protein -
  NHF51_RS19580 (NHF51_19580) - 4269117..4269767 (-) 651 WP_252995242.1 DNA mismatch repair protein MutT -
  NHF51_RS19585 (NHF51_19585) - 4269842..4270477 (+) 636 WP_252995243.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54730.77 Da        Isoelectric Point: 7.6885

>NTDB_id=701307 NHF51_RS19555 WP_252995238.1 4264864..4266378(+) (comM) [Aeromonas encheleia strain SOD01]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRVGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
EPSRQIRERVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLESAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=701307 NHF51_RS19555 WP_252995238.1 4264864..4266378(+) (comM) [Aeromonas encheleia strain SOD01]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATCGCGGCGCCGCAAGTCACGGTAGAAGTCCATTTATCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGATTACCGGAAACCTCGGTGAAGGAGTCGCGGGATAGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAGCACATCACGGTCAACCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGTCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAACTGGCCCTGACCGGCGAGATCCGCCCCGTACTCGGGGTCTTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGCC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCCGAGGCCTCGCTCATCCAGGATGCGGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTGACCGCCTGGCTGGCGGGCCAGTATGAGCTGCCACTGCCGGAGCCCCAGAGTACGGAGGCGCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGCCCCCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGCCTGCCCGGCATACTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGACTCACCCCCCGGGTCGGCCACTGGCACCACAGGCCCTATCG
CACGCCCCATCACAGCGCCTCCGCCGTGGCCTTGGTGGGAGGAGGCAGCCACCCGAGACCCGGTGAGATCTCGCTGGCCC
ACAACGGGGTACTGTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCGCGCCAGGTGGATTTCCCCGCCCGCTTTCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGGGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTCGGCAAGCTCTCCGGCC
CTTTCCTCGATCGCTTCGATCTGACGGTGGAGGTACCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGCGGT
GAGCCGAGCCGCCAGATCCGGGAGCGGGTGCTGGCGGCGCGGGAGCGGATGCTGAGCCGCAATGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATCGAAGATATTTGCCGACTATCGCCGCAAGATGCCGAGTTTCTGGAGAGCGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCGCGCACCATAGCGGATCTGGCGGGCCGGCCCGCCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACAGGGCCATGGATCGGCTGCTCTCCCGCCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.46