Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NHF51_RS03905 Genome accession   NZ_CP099717
Coordinates   788846..789166 (-) Length   106 a.a.
NCBI ID   WP_042655062.1    Uniprot ID   A0AAE9MIW4
Organism   Aeromonas encheleia strain SOD01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 783846..794166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF51_RS03885 (NHF51_03885) - 784210..784884 (-) 675 WP_042655071.1 DnaT-like ssDNA-binding domain-containing protein -
  NHF51_RS03890 (NHF51_03890) - 785190..786161 (+) 972 WP_218330223.1 response regulator -
  NHF51_RS03895 (NHF51_03895) - 786229..787626 (-) 1398 WP_218292824.1 peptide MFS transporter -
  NHF51_RS03900 (NHF51_03900) galU 787841..788752 (-) 912 WP_252995670.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NHF51_RS03905 (NHF51_03905) comEA 788846..789166 (-) 321 WP_042655062.1 ComEA family DNA-binding protein Machinery gene
  NHF51_RS03910 (NHF51_03910) cysQ 789332..790102 (+) 771 WP_252995671.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NHF51_RS03915 (NHF51_03915) - 790193..790489 (-) 297 WP_252995672.1 YciI family protein -
  NHF51_RS03920 (NHF51_03920) - 790514..791065 (-) 552 WP_042655065.1 septation protein A -
  NHF51_RS03925 (NHF51_03925) - 791229..792743 (-) 1515 WP_252995673.1 pyridoxal-dependent decarboxylase -
  NHF51_RS03930 (NHF51_03930) - 792944..793576 (+) 633 WP_252995674.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11068.91 Da        Isoelectric Point: 10.0127

>NTDB_id=701290 NHF51_RS03905 WP_042655062.1 788846..789166(-) (comEA) [Aeromonas encheleia strain SOD01]
MNRKTLIAALLLSGLPLLSQPVLAADKPAAKPATTVTSAKEVGKINLNTASAAELAELKGIGEKKAQAIVDYREKQGKFT
SVDQLAEVSGIGPATLDANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=701290 NHF51_RS03905 WP_042655062.1 788846..789166(-) (comEA) [Aeromonas encheleia strain SOD01]
ATGAACAGAAAGACCCTGATCGCCGCCCTGTTGCTGAGCGGACTGCCCCTGCTGAGCCAGCCTGTGCTCGCCGCCGACAA
GCCGGCGGCCAAGCCCGCCACGACCGTCACCAGCGCCAAGGAGGTTGGCAAGATCAACCTCAACACCGCCAGCGCCGCTG
AGCTCGCGGAGCTGAAAGGGATCGGCGAGAAGAAGGCCCAGGCCATCGTCGACTATCGCGAGAAGCAGGGCAAGTTCACC
TCGGTGGATCAGCTGGCGGAGGTGAGCGGCATAGGGCCGGCCACCCTGGATGCGAACCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

51.887

100

0.519
  comEA Vibrio cholerae strain A1552

51.887

100

0.519
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA/comE1 Glaesserella parasuis strain SC1401

50

86.792

0.434
  comEA Legionella pneumophila str. Paris

44.554

95.283

0.425
  comEA Legionella pneumophila strain ERS1305867

44.554

95.283

0.425