Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NHH62_RS20785 Genome accession   NZ_CP099647
Coordinates   349419..351026 (-) Length   535 a.a.
NCBI ID   WP_030099952.1    Uniprot ID   -
Organism   Paraburkholderia fungorum strain OTU2SAUBB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 344419..356026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHH62_RS20780 (NHH62_20785) - 345680..349369 (+) 3690 WP_253045539.1 autotransporter outer membrane beta-barrel domain-containing protein -
  NHH62_RS20785 (NHH62_20790) comM 349419..351026 (-) 1608 WP_030099952.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NHH62_RS20790 (NHH62_20795) - 351147..351404 (-) 258 WP_028199025.1 accessory factor UbiK family protein -
  NHH62_RS20795 (NHH62_20800) - 351814..352152 (+) 339 WP_006048089.1 P-II family nitrogen regulator -
  NHH62_RS20800 (NHH62_20805) - 352196..353704 (+) 1509 WP_028199026.1 ammonium transporter -
  NHH62_RS20805 (NHH62_20810) gshA 353935..355224 (+) 1290 WP_028199027.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 56336.39 Da        Isoelectric Point: 7.5874

>NTDB_id=701233 NHH62_RS20785 WP_030099952.1 349419..351026(-) (comM) [Paraburkholderia fungorum strain OTU2SAUBB1]
MSLAVVRSRAPASGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCSFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAESLLHREFAGELSLTGALRPMRGAFAMACGTARSGRAPGALTSFEDIAMASACPATAASPQP
TRTPQLYLPAASAAEAALVPGVDVYGATDLPTLCAHLNGAPDGQLRPVPAPDLSGFTPSVVPDMADVIGQRGARRALEVA
AAGGHHVLLVGPPGAGKSMLAARLPGLLPTMTDDEALTSAALLSASRAGFSPSQWRQRPFRAPHHSSSAAALVGGRNPPQ
PGEITLAHLGVLFLDELPEFDRHVLETLREPLEASRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCTPDIA
ARYLRKLSGPLLDRIDIQLEIPALTPAELSARSDVCGEASATIAARVNTARARQLARQGKTNRELSGREVDDVCRLDAAG
EALLREAGERFGWSARAYYRVLKVARSVADLAGADMPEVSHIGEAVQYRRVFAAQ

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=701233 NHH62_RS20785 WP_030099952.1 349419..351026(-) (comM) [Paraburkholderia fungorum strain OTU2SAUBB1]
ATGTCGCTTGCCGTGGTGCGCAGTCGCGCGCCGGCCTCTGGCCGCGCGCCCGAAGTAACCGTCGAGGTTCACCTCGCGAA
CGGATTACCCTCTTTTTCGATCGTCGGCCTCCCCGATCTGGAAGTGCGCGAAAGCCGTGAGCGCGTACGCGCGGCACTGC
AGAACTGCAGCTTCGATTTCCCCGTGCGGCGTATCACCGTCAATCTCGCGCCCGCCGATTTGCCCAAGGAATCGGGTCGC
TTCGATTTGCCCATCGCGCTCGGCATCCTCGCCGCCAGCGGGCAGATTCCGGCGGAGTCGCTGCTGCATCGCGAATTTGC
CGGTGAGTTGTCTCTCACCGGTGCGTTGCGCCCCATGCGCGGCGCGTTCGCCATGGCGTGCGGCACGGCGCGCAGCGGCA
GGGCGCCCGGCGCGCTGACATCGTTCGAAGACATTGCCATGGCCTCGGCTTGTCCGGCCACGGCCGCTTCACCCCAGCCT
ACGCGCACGCCCCAGCTTTATCTGCCGGCGGCGAGCGCGGCGGAAGCGGCGCTGGTGCCCGGCGTGGATGTGTACGGTGC
CACGGACCTTCCCACGCTGTGCGCCCATCTCAACGGCGCGCCCGACGGGCAACTCCGTCCGGTTCCGGCGCCCGACCTGA
GCGGCTTCACTCCATCCGTAGTGCCGGACATGGCGGACGTGATCGGCCAGCGCGGCGCACGCCGCGCGCTCGAAGTGGCG
GCGGCCGGCGGTCATCACGTGTTGCTGGTCGGGCCGCCGGGCGCCGGCAAGTCGATGCTGGCGGCACGGCTGCCCGGCCT
CCTGCCCACCATGACGGACGACGAAGCGCTCACCTCGGCCGCCTTGCTGTCCGCGAGCCGCGCCGGCTTTTCACCGTCGC
AGTGGCGGCAGCGGCCGTTTCGCGCGCCGCATCATTCGTCGAGCGCGGCTGCGCTCGTGGGCGGACGCAATCCGCCGCAG
CCCGGCGAAATCACGCTGGCGCATCTCGGCGTGCTGTTTCTGGACGAATTGCCTGAATTCGACCGTCACGTGCTGGAAAC
CTTGCGCGAACCGCTGGAAGCGAGCCGCATCACGATCTCACGCGCGGCGTTGCAGGCGGATTTTCCAGCAGCGTGCCAGC
TGATCGCTGCAATGAATCCCTGCCCATGCGGCTGGCGCGGCGACCCGGGCGGCCGGTGCCGCTGCACGCCCGACATCGCC
GCGCGCTATCTGCGCAAGCTATCCGGACCGCTGCTCGATCGCATCGATATCCAGCTGGAAATTCCCGCGCTCACGCCCGC
CGAGTTGTCGGCACGTTCCGATGTGTGCGGCGAGGCAAGCGCGACTATCGCGGCGCGCGTCAATACGGCGCGCGCCCGGC
AACTCGCGCGACAAGGCAAGACCAACCGCGAGTTGAGCGGCCGGGAGGTAGACGATGTCTGCCGGCTCGACGCCGCCGGC
GAAGCCCTGCTGCGAGAGGCCGGCGAGCGCTTCGGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTGGCGCGAAG
CGTCGCCGATCTGGCCGGCGCGGACATGCCGGAGGTAAGTCACATCGGAGAAGCCGTTCAGTACCGGCGGGTATTCGCGG
CGCAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(223-428)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(437-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.045

100

0.482
  comM Vibrio campbellii strain DS40M4

47.925

99.065

0.475
  comM Haemophilus influenzae Rd KW20

46.226

99.065

0.458
  comM Legionella pneumophila str. Paris

45.849

99.065

0.454
  comM Legionella pneumophila strain ERS1305867

45.849

99.065

0.454
  comM Glaesserella parasuis strain SC1401

45.747

98.879

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.954

97.57

0.409