Detailed information    

insolico Bioinformatically predicted

Overview


Name   comB   Type   Regulator
Locus tag   NEE09_RS10775 Genome accession   NZ_CP099641
Coordinates   2088303..2089652 (-) Length   449 a.a.
NCBI ID   WP_000801603.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2083303..2094652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS10760 - 2083499..2087224 (-) 3726 WP_000361163.1 phosphoribosylformylglycinamidine synthase -
  NEE09_RS10765 - 2087281..2087424 (-) 144 WP_050167432.1 hypothetical protein -
  NEE09_RS10770 purC 2087426..2088133 (-) 708 WP_000043304.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  NEE09_RS10775 comB 2088303..2089652 (-) 1350 WP_000801603.1 competence pheromone export protein ComB Regulator
  NEE09_RS10780 comA 2089665..2091818 (-) 2154 WP_000668299.1 peptide cleavage/export ABC transporter ComA Regulator
  NEE09_RS10785 - 2092198..2092689 (-) 492 WP_000671990.1 hypothetical protein -
  NEE09_RS10790 - 2092670..2093266 (-) 597 WP_000687787.1 ATP-binding cassette domain-containing protein -
  NEE09_RS10795 - 2093263..2093745 (-) 483 WP_001232094.1 stage II sporulation protein M -

Sequence


Protein


Download         Length: 449 a.a.        Molecular weight: 49629.51 Da        Isoelectric Point: 5.3895

>NTDB_id=701229 NEE09_RS10775 WP_000801603.1 2088303..2089652(-) (comB) [Streptococcus pneumoniae strain ATCC 700671]
MKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATIEPSRILANIQSTSNNRILVNHLEENKL
VKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQN
ETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAMETGASLASQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQIS
QLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLAQKILEAESGKKVQGNLLDKGKITASEDGVLH
LNPETSDSSMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAGNQLFLDSTITSIDATATKTEK
GNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=701229 NEE09_RS10775 WP_000801603.1 2088303..2089652(-) (comB) [Streptococcus pneumoniae strain ATCC 700671]
ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTACCATAATTTTTCCAGTAGTGTGATTGTACCCAT
GGCCCTTCTGCTCGTGTTTTTACTTGGCTTTGCAACTGTTGCAGAGAAGGAGATGAGTTTGTCCACTAGAGCTACTATCG
AACCCAGTCGTATCCTTGCAAATATCCAGTCAACTAGCAACAATCGTATTCTTGTCAATCATTTGGAAGAAAATAAGCTG
GTTAAGAAGGGGGATCTTTTGGTTCAATACCAAGAAGGGGCAGAGGGTGTCCAAGCGGAGTCCTATGCCAGTCAGTTGGA
CATGCTAAAGGATCAAAAAAAGCAATTAGAGTATCTGCAAAAGAGCCTGCAAGAAGGGGAGAACCACTTTCCAGAGGAGG
ATAAGTTTGGCTACCAAGCCACCTTTCGCGACTACATCAGTCAAGCAGGCAGTCTTAGGGCTAGTACATCGCAACAAAAT
GAGACCATCGCGTCCCAGAATGCAGCAGCTAGCCAAACCCAAGCCGAAATCGGCAACCTCATCAGTCAAACAGAGGCTAA
AATTCGCGATTACCAGACAGCTAAGTCAGCTATGGAAACAGGTGCTTCCTTGGCCAGTCAGAATCTAGCCTACTCTCTTT
ACCAGTCCTACAAGTCTCAGGGCGAGGAAAATCCCCAAACTAAGGTTCAGGCAGTTGCACAGGTTGAAGCACAGATTTCT
CAGTTAGAATCTAGTCTTGCTACTTACCGTGTCCAGTATGCAGGTTCAGGTACCCAGCAAGCCTATGCGTCAGGGTTAAG
CAGTCAATTGGAATCCCTTAAATCCCAACATTTGGCAAAGGTTGGTCAGGAATTGACCCTTCTAGCCCAGAAAATCTTGG
AGGCAGAGTCAGGTAAGAAGGTACAGGGAAATCTTTTAGACAAGGGGAAAATTACGGCGAGTGAGGATGGGGTGCTTCAT
CTTAATCCTGAGACCAGTGATTCTAGCATGGTTGCAGAAGGTGCCCTACTAGCCCAACTTTATCCATCTTTGGAAAGAGA
AGGGAAAGCCAAACTCACAGCCTATCTAAGTTCAAAAGATGTAGCAAGAATCAAGGTCGGTGATTCTGTTCGCTATACTA
CGACTCATGATGCCGGGAATCAACTTTTCCTAGATTCAACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAGAAA
GGGAATTTCTTTAAAATAGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTTAGGTACGGGGTGGAAGGCCG
CTTGCAGATGATTACGGGCAAGAAAAGTTATCTACGTTATTATTTGGATCAATTTTTGAACAAAGAGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae TIGR4

98.886

100

0.989

  comB Streptococcus pneumoniae Rx1

98.664

100

0.987

  comB Streptococcus pneumoniae D39

98.664

100

0.987

  comB Streptococcus pneumoniae R6

98.664

100

0.987

  comB Streptococcus mitis SK321

94.878

100

0.949

  comB Streptococcus mitis NCTC 12261

94.432

100

0.944

  comB Streptococcus gordonii str. Challis substr. CH1

55.111

100

0.552