Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NF674_RS25625 Genome accession   NZ_CP099610
Coordinates   5749136..5750629 (+) Length   497 a.a.
NCBI ID   WP_252875302.1    Uniprot ID   -
Organism   Pseudomonas moraviensis strain OTU5VILLAA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5744136..5755629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF674_RS25590 (NF674_25590) - 5744198..5744458 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  NF674_RS25595 (NF674_25595) - 5744711..5744908 (-) 198 WP_252875296.1 addiction module antidote protein, HigA family -
  NF674_RS25600 (NF674_25600) - 5745185..5745427 (+) 243 WP_252875297.1 hypothetical protein -
  NF674_RS25605 (NF674_25605) - 5745394..5747190 (-) 1797 WP_252875298.1 DUF2326 domain-containing protein -
  NF674_RS25610 (NF674_25610) - 5747177..5747338 (-) 162 WP_252875299.1 ABC-three component system middle component 8 -
  NF674_RS25615 (NF674_25615) - 5747394..5748374 (-) 981 WP_252875300.1 ABC-three component system protein -
  NF674_RS25620 (NF674_25620) - 5748405..5748725 (-) 321 WP_252875301.1 helix-turn-helix transcriptional regulator -
  NF674_RS25625 (NF674_25625) comM 5749136..5750629 (+) 1494 WP_252875302.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NF674_RS25630 (NF674_25630) - 5750626..5751840 (-) 1215 WP_083353814.1 aldose 1-epimerase family protein -
  NF674_RS25635 (NF674_25635) - 5752036..5754012 (-) 1977 WP_123417737.1 methyl-accepting chemotaxis protein -
  NF674_RS25640 (NF674_25640) - 5754200..5755120 (-) 921 WP_042607123.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52922.14 Da        Isoelectric Point: 8.1596

>NTDB_id=701120 NF674_RS25625 WP_252875302.1 5749136..5750629(+) (comM) [Pseudomonas moraviensis strain OTU5VILLAA1]
MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLRLDDVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKL
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADERWLEGACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=701120 NF674_RS25625 WP_252875302.1 5749136..5750629(+) (comM) [Pseudomonas moraviensis strain OTU5VILLAA1]
ATGTCCCTCTCCATTGTCCACAGCCGCGCCCAGGTTGGCGTGGAAGCCCCAGCCGTCACTGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAACTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCTTTGGGAATTTTGTCGGCGAGTGTGCAGGTGCCGTGTCTCAGGCTGGACGATGTGGAATGCCT
CGGAGAGCTGGCGTTGTCCGGAGCGGTGCGGCCGGTGCGTGGCGTGCTGCCAGCGGCATTGGCGGCGCGCAAGGCCGGGC
GGGCGCTGGTGGTGCCGCGGGCGAATGCGGAAGAGGCGTGTCTGGCCTCGGGGCTGAAGGTGTTTGCGGTCGATCACTTG
CTGGAAGCGGTGGCCCACTTCAATGGGCATACGCCGGTCGAACCTTACGTTTCCGACGGATTGATGCATGCCGCCAAGCC
CTATCCCGACCTTAACGAGGTGCAAGGGCAAACAGCCGCCAAACGTGCGCTGCTTATTGCCGCCGCGGGGGCGCACAATT
TGTTGTTCAGCGGGCCTCCAGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCGGGATTGCTGCCGCCGCTTTCCGAG
TGCGAAGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGTGTGCCTCTGACTCACTGGCCGCAGCGCCCCTTTCG
CCAACCGCACCACTCCGCTTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAACCGCAACCTGGTGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAATTGCCGGAGTTTGATCGCAAGGTTCTCGAGGTGCTCCGCGAGCCCTTGGAGTCC
GGGCATATCGTCATCGCTCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGCTTTCAGCTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCTCGTGCACACCGGACATGGTGCAGCGCTATCGCAACAAATTGT
CGGGGCCGCTGCTGGATCGTATCGATCTGCACCTGACCGTGGCGCGTGAAGCAACAGCATTGAATCCGGCAGCCAAGCTC
GGGGAGGACAGCGCCAGCGCTGCGGCGTTGGTGGCTGAAGCGCGGGAGCGCCAGCAAAAACGCCAAGGCTGCGCCAATGC
GTTTCTCGATCTGCCGGGGTTGAAGCGTCACTGCAAGTTATCCACAGCCGATGAGAGATGGCTGGAAGGGGCCTGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACACTGGCGGATCTTGAGCAGGCCGATGCG
ATTACCCGCGAGCATCTGGCGGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.39

100

0.529
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46

100

0.463