Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | NF673_RS25765 | Genome accession | NZ_CP099609 |
| Coordinates | 5783199..5784692 (+) | Length | 497 a.a. |
| NCBI ID | WP_042607120.1 | Uniprot ID | A0AAE2DY99 |
| Organism | Pseudomonas moraviensis strain OTU5MASSA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 5768240..5816014 | 5783199..5784692 | within | 0 |
Gene organization within MGE regions
Location: 5768240..5816014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF673_RS25690 (NF673_25690) | dapF | 5768730..5769560 (+) | 831 | WP_042607114.1 | diaminopimelate epimerase | - |
| NF673_RS25695 (NF673_25695) | - | 5769574..5770299 (+) | 726 | WP_042607115.1 | DUF484 family protein | - |
| NF673_RS25700 (NF673_25700) | xerC | 5770302..5771201 (+) | 900 | WP_039757393.1 | tyrosine recombinase XerC | - |
| NF673_RS25705 (NF673_25705) | - | 5771198..5771905 (+) | 708 | WP_252880978.1 | HAD-IA family hydrolase | - |
| NF673_RS25710 (NF673_25710) | sutA | 5772091..5772417 (-) | 327 | WP_016772583.1 | transcriptional regulator SutA | - |
| NF673_RS25715 (NF673_25715) | - | 5772519..5772944 (-) | 426 | WP_042607117.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| NF673_RS25720 (NF673_25720) | - | 5773159..5774496 (-) | 1338 | WP_041476939.1 | ammonium transporter | - |
| NF673_RS25725 (NF673_25725) | glnK | 5774534..5774872 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| NF673_RS25730 (NF673_25730) | - | 5775267..5775527 (+) | 261 | WP_007920416.1 | accessory factor UbiK family protein | - |
| NF673_RS25735 (NF673_25735) | - | 5775780..5775977 (-) | 198 | WP_252873555.1 | HigA family addiction module antitoxin | - |
| NF673_RS25740 (NF673_25740) | - | 5776301..5776765 (+) | 465 | WP_252880979.1 | hypothetical protein | - |
| NF673_RS25745 (NF673_25745) | - | 5777148..5778053 (+) | 906 | Protein_5068 | YifB family Mg chelatase-like AAA ATPase | - |
| NF673_RS25750 (NF673_25750) | - | 5778145..5779416 (-) | 1272 | WP_252880980.1 | hypothetical protein | - |
| NF673_RS25755 (NF673_25755) | - | 5779413..5781449 (-) | 2037 | WP_252880981.1 | ATP-binding protein | - |
| NF673_RS25760 (NF673_25760) | - | 5781460..5782512 (-) | 1053 | WP_252880982.1 | DNA cytosine methyltransferase | - |
| NF673_RS25765 (NF673_25765) | comM | 5783199..5784692 (+) | 1494 | WP_042607120.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| NF673_RS25770 (NF673_25770) | - | 5784689..5785903 (-) | 1215 | WP_065616356.1 | aldose 1-epimerase family protein | - |
| NF673_RS25775 (NF673_25775) | - | 5786123..5788099 (-) | 1977 | WP_252880983.1 | methyl-accepting chemotaxis protein | - |
| NF673_RS25780 (NF673_25780) | - | 5788287..5789207 (-) | 921 | WP_042607123.1 | LysR substrate-binding domain-containing protein | - |
| NF673_RS25785 (NF673_25785) | - | 5789367..5790761 (+) | 1395 | WP_252880984.1 | NorM family multidrug efflux MATE transporter | - |
| NF673_RS25790 (NF673_25790) | - | 5790870..5792543 (-) | 1674 | WP_042607124.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| NF673_RS25795 (NF673_25795) | rep | 5792816..5794825 (+) | 2010 | WP_016772574.1 | DNA helicase Rep | - |
| NF673_RS25800 (NF673_25800) | - | 5794883..5795455 (+) | 573 | WP_042607125.1 | xanthine phosphoribosyltransferase | - |
| NF673_RS25805 (NF673_25805) | - | 5795587..5797509 (-) | 1923 | WP_252880985.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| NF673_RS25810 (NF673_25810) | - | 5797809..5798687 (+) | 879 | WP_252880986.1 | ABC transporter transmembrane domain-containing protein | - |
| NF673_RS25815 (NF673_25815) | - | 5798691..5799572 (+) | 882 | WP_252880987.1 | hypothetical protein | - |
| NF673_RS25820 (NF673_25820) | - | 5799565..5800284 (+) | 720 | WP_082367948.1 | AAA family ATPase | - |
| NF673_RS25825 (NF673_25825) | - | 5800338..5800751 (-) | 414 | WP_042607130.1 | c-type cytochrome | - |
| NF673_RS25830 (NF673_25830) | - | 5800932..5801480 (-) | 549 | WP_016772566.1 | cupin domain-containing protein | - |
| NF673_RS25835 (NF673_25835) | alr | 5801569..5802642 (-) | 1074 | WP_042607131.1 | alanine racemase | - |
| NF673_RS25840 (NF673_25840) | - | 5802736..5803089 (-) | 354 | WP_042607132.1 | RidA family protein | - |
| NF673_RS25845 (NF673_25845) | dadA | 5803061..5804365 (-) | 1305 | WP_252880988.1 | D-amino acid dehydrogenase | - |
| NF673_RS25850 (NF673_25850) | - | 5804519..5805007 (+) | 489 | WP_010465173.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| NF673_RS25855 (NF673_25855) | - | 5805126..5805479 (-) | 354 | WP_116658192.1 | YkgJ family cysteine cluster protein | - |
| NF673_RS25860 (NF673_25860) | - | 5805626..5806936 (+) | 1311 | WP_252880989.1 | FAD-binding oxidoreductase | - |
| NF673_RS25865 (NF673_25865) | - | 5807055..5807297 (-) | 243 | WP_064364649.1 | DUF1127 domain-containing protein | - |
| NF673_RS25870 (NF673_25870) | - | 5807473..5808894 (+) | 1422 | WP_252880990.1 | PLP-dependent aminotransferase family protein | - |
| NF673_RS25875 (NF673_25875) | - | 5808956..5810524 (+) | 1569 | WP_252880991.1 | phospholipase D family protein | - |
| NF673_RS25880 (NF673_25880) | - | 5810614..5811756 (-) | 1143 | WP_252880992.1 | MFS transporter | - |
| NF673_RS25885 (NF673_25885) | - | 5811941..5813434 (-) | 1494 | WP_252880993.1 | aldehyde dehydrogenase | - |
| NF673_RS25890 (NF673_25890) | - | 5813671..5814033 (+) | 363 | WP_042608123.1 | cupin domain-containing protein | - |
| NF673_RS25895 (NF673_25895) | rpmG | 5814212..5814367 (-) | 156 | WP_016772554.1 | 50S ribosomal protein L33 | - |
| NF673_RS25900 (NF673_25900) | rpmB | 5814379..5814612 (-) | 234 | WP_007920377.1 | 50S ribosomal protein L28 | - |
Sequence
Protein
Download Length: 497 a.a. Molecular weight: 52851.01 Da Isoelectric Point: 8.0086
>NTDB_id=701091 NF673_RS25765 WP_042607120.1 5783199..5784692(+) (comM) [Pseudomonas moraviensis strain OTU5MASSA1]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADERWLEGACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADERWLEGACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP
Nucleotide
Download Length: 1494 bp
>NTDB_id=701091 NF673_RS25765 WP_042607120.1 5783199..5784692(+) (comM) [Pseudomonas moraviensis strain OTU5MASSA1]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACTGTCGAAGTTCATCTGGCAAA
CGGTCTGCCCTCCCTGACCATGGTCGGACTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAACTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCTTTGGGAATTTTGTCGGCGAGTGTGCAGGTGCCGTGTCTCACGCTGGACGATGTGGAATGCCT
CGGAGAGCTGGCGTTGTCCGGCGCGGTGCGGCCGGTACGCGGGGTCTTGCCAGCGGCATTGGCGGCGCGCAAGGCCGGGC
GGGCGCTGGTGGTGCCGCGGGCGAATGCGGAAGAGGCGTGTTTGGCCTCGGGGCTGAAGGTGTTTGCGGTCGATCACTTG
CTGGAAGCGGTGGCCCACTTCAATGGGCATACGCCGGTCGAGCCTTACGTTTCCGATGGTTTGATGCACGCTGCCAAGCC
CTATCCCGACCTTAACGAGGTGCAAGGGCAAACAGCCGCCAAACGTGCGCTGCTGATTGCCGCCGCGGGGGCGCACAATT
TGTTGTTCAGCGGACCTCCAGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCGGGGTTGTTGCCGCCGCTTTCCGAG
TGCGAAGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGTGTGCCTCTGACTCACTGGCCGCAGCGCCCCTTTCG
CCAACCGCACCACTCTGCTTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAGCCGCAACCCGGTGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAATTGCCGGAGTTTGATCGCAAGGTTCTCGAGGTGCTCCGCGAGCCCTTGGAGTCC
GGGCATATCGTCATCGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGCTTTCAGCTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCTCGTGCACACCGGACATGGTGCAGCGCTATCGCAACAAATTGT
CGGGGCCGCTGCTGGATCGTATCGATCTGCACCTGACCGTAGCGCGTGAAGCGACAGCATTGAATCCGGCAGCCAAGCCC
GGGGAGGACAGCGCCAGCGCTGCGGCGTTGGTGGCCGAAGCGCGGGAGCGCCAGCAAAAACGCCAAGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGTTGAAGCGTCACTGCAAGTTATCCACAGCCGATGAGAGATGGCTGGAAGGGGCCTGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACACTGGCGGATCTTGAGCAGGCCGATGCG
ATTACCCGCGAGCATCTGGCGGAGGCACTGCAATACCGGCCGGCGACACCTTAA
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACTGTCGAAGTTCATCTGGCAAA
CGGTCTGCCCTCCCTGACCATGGTCGGACTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAACTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCTTTGGGAATTTTGTCGGCGAGTGTGCAGGTGCCGTGTCTCACGCTGGACGATGTGGAATGCCT
CGGAGAGCTGGCGTTGTCCGGCGCGGTGCGGCCGGTACGCGGGGTCTTGCCAGCGGCATTGGCGGCGCGCAAGGCCGGGC
GGGCGCTGGTGGTGCCGCGGGCGAATGCGGAAGAGGCGTGTTTGGCCTCGGGGCTGAAGGTGTTTGCGGTCGATCACTTG
CTGGAAGCGGTGGCCCACTTCAATGGGCATACGCCGGTCGAGCCTTACGTTTCCGATGGTTTGATGCACGCTGCCAAGCC
CTATCCCGACCTTAACGAGGTGCAAGGGCAAACAGCCGCCAAACGTGCGCTGCTGATTGCCGCCGCGGGGGCGCACAATT
TGTTGTTCAGCGGACCTCCAGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCGGGGTTGTTGCCGCCGCTTTCCGAG
TGCGAAGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGTGTGCCTCTGACTCACTGGCCGCAGCGCCCCTTTCG
CCAACCGCACCACTCTGCTTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAGCCGCAACCCGGTGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAATTGCCGGAGTTTGATCGCAAGGTTCTCGAGGTGCTCCGCGAGCCCTTGGAGTCC
GGGCATATCGTCATCGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGCTTTCAGCTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCTCGTGCACACCGGACATGGTGCAGCGCTATCGCAACAAATTGT
CGGGGCCGCTGCTGGATCGTATCGATCTGCACCTGACCGTAGCGCGTGAAGCGACAGCATTGAATCCGGCAGCCAAGCCC
GGGGAGGACAGCGCCAGCGCTGCGGCGTTGGTGGCCGAAGCGCGGGAGCGCCAGCAAAAACGCCAAGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGTTGAAGCGTCACTGCAAGTTATCCACAGCCGATGAGAGATGGCTGGAAGGGGCCTGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACACTGGCGGATCTTGAGCAGGCCGATGCG
ATTACCCGCGAGCATCTGGCGGAGGCACTGCAATACCGGCCGGCGACACCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
54.545 |
99.598 |
0.543 |
| comM | Vibrio campbellii strain DS40M4 |
54.343 |
99.598 |
0.541 |
| comM | Haemophilus influenzae Rd KW20 |
53.106 |
100 |
0.533 |
| comM | Glaesserella parasuis strain SC1401 |
52.39 |
100 |
0.529 |
| comM | Legionella pneumophila str. Paris |
50.402 |
100 |
0.505 |
| comM | Legionella pneumophila strain ERS1305867 |
50.402 |
100 |
0.505 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
45.491 |
100 |
0.457 |