Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NF672_RS25710 Genome accession   NZ_CP099608
Coordinates   5760468..5761961 (+) Length   497 a.a.
NCBI ID   WP_123417739.1    Uniprot ID   A0A423NXN9
Organism   Pseudomonas moraviensis strain OTU5BARRA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5755468..5766961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF672_RS25680 (NF672_25680) - 5755838..5756263 (-) 426 WP_042607117.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NF672_RS25685 (NF672_25685) - 5756479..5757816 (-) 1338 WP_041476939.1 ammonium transporter -
  NF672_RS25690 (NF672_25690) glnK 5757854..5758192 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  NF672_RS25695 (NF672_25695) - 5758587..5758847 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  NF672_RS25700 (NF672_25700) - 5759100..5759297 (-) 198 WP_252873555.1 HigA family addiction module antitoxin -
  NF672_RS25705 (NF672_25705) - 5759621..5760085 (+) 465 WP_073470953.1 hypothetical protein -
  NF672_RS25710 (NF672_25710) comM 5760468..5761961 (+) 1494 WP_123417739.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NF672_RS25715 (NF672_25715) - 5761958..5763172 (-) 1215 WP_083353814.1 aldose 1-epimerase family protein -
  NF672_RS25720 (NF672_25720) - 5763368..5765344 (-) 1977 WP_042607122.1 methyl-accepting chemotaxis protein -
  NF672_RS25725 (NF672_25725) - 5765532..5766452 (-) 921 WP_042607123.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52865.04 Da        Isoelectric Point: 8.0086

>NTDB_id=701062 NF672_RS25710 WP_123417739.1 5760468..5761961(+) (comM) [Pseudomonas moraviensis strain OTU5BARRA1]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADERWLEGACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=701062 NF672_RS25710 WP_123417739.1 5760468..5761961(+) (comM) [Pseudomonas moraviensis strain OTU5BARRA1]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTTCATCTGGCAAA
CGGTCTGCCCTCCCTGACCATGGTCGGACTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTACGCAGCGCGATCA
TCAACTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACTTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGACGC
TTCGATCTGGCGATTGCCTTGGGGATTTTGTCGGCCAGTGTGCAGGTGCCCTGCCTGACCCTGGACGAGGTGGAATGTCT
GGGCGAGTTGGCGCTGTCGGGTGCCGTGCGGCCGGTGCGTGGTGTGCTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCGTTGGTGGTGCCTCGAGCGAATGCCGAGGAGGCGTGTCTGGCGTCGGGGTTGAAGGTGTTTGCGGTGGATCATTTG
CTGGAAGCGGTGGCCCATTTCAACGGGCACACGCCGGTGGAGCCTTACGTTTCCGACGGCTTAATGCATGCCGCCAAACC
CTATCCCGATCTCAATGAGGTGCAGGGGCAGACAGCCGCCAAACGCGCACTGCTTATTGCCGCCGCGGGGGCGCACAATT
TGTTGTTCAGCGGGCCTCCAGGAACCGGCAAGACACTGCTGGCCAGTCGTCTGCCGGGGTTGCTGCCGCCGCTTTCCGAG
TGCGAAGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGTGTGCCTCTGACTCACTGGCCGCAGCGCCCCTTTCG
CCAACCGCACCACTCCGCTTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAACCGCAACCCGGTGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAATTGCCGGAGTTTGATCGCAAGGTTCTCGAGGTGCTCCGCGAGCCCTTGGAGTCC
GGGCATATCGTCATCGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGCTTTCAGCTGGTGGCAGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCTCGTGCACACCGGACATGGTGCAGCGCTATCGCAACAAATTGT
CGGGGCCGCTGCTGGATCGTATCGATCTGCACCTGACCGTGGCGCGTGAAGCAACAGCATTGAATCCGGCAGCCAAGCCC
GGGGAGGACAGCGCCAGCGCTGCGGCGTTGGTGGCCGAAGCGCGGGAGCGCCAGCAAAAACGCCAAGGCTGCGCCAATGC
GTTTCTCGATCTGCCGGGGTTGAAGCGTCACTGCAAGTTATCCACAGCCGATGAGAGATGGCTGGAAGGGGCCTGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACACTGGCGGATCTTGAGCAGGCCGATGCG
ATTACCCGCGAGCATCTGGCGGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423NXN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.39

100

0.529
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457