Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NF679_RS25700 Genome accession   NZ_CP099601
Coordinates   5684457..5685950 (+) Length   497 a.a.
NCBI ID   WP_252868465.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MONEA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5679457..5690950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF679_RS25660 (NF679_25660) sutA 5679768..5680094 (-) 327 WP_056791627.1 transcriptional regulator SutA -
  NF679_RS25665 (NF679_25665) - 5680196..5680621 (-) 426 WP_024014775.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NF679_RS25670 (NF679_25670) - 5680837..5682174 (-) 1338 WP_041476939.1 ammonium transporter -
  NF679_RS25675 (NF679_25675) glnK 5682212..5682550 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  NF679_RS25680 (NF679_25680) - 5682945..5683205 (+) 261 WP_095181253.1 accessory factor UbiK family protein -
  NF679_RS25685 (NF679_25685) - 5683416..5683670 (-) 255 WP_252868462.1 HigA family addiction module antitoxin -
  NF679_RS25690 (NF679_25690) - 5683858..5684079 (+) 222 WP_252868463.1 hypothetical protein -
  NF679_RS25695 (NF679_25695) - 5684114..5684284 (+) 171 WP_252868464.1 hypothetical protein -
  NF679_RS25700 (NF679_25700) comM 5684457..5685950 (+) 1494 WP_252868465.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NF679_RS25705 (NF679_25705) - 5685947..5687161 (-) 1215 WP_073470931.1 aldose 1-epimerase family protein -
  NF679_RS25710 (NF679_25710) - 5687357..5689333 (-) 1977 WP_016772578.1 methyl-accepting chemotaxis protein -
  NF679_RS25715 (NF679_25715) - 5689521..5690441 (-) 921 WP_016772577.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52823.00 Da        Isoelectric Point: 8.0086

>NTDB_id=701003 NF679_RS25700 WP_252868465.1 5684457..5685950(+) (comM) [Pseudomonas siliginis strain OTU6MONEA1]
MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GENSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCTLSTADEKWLEAACERLILSLRSAHRLLKVARTLADLEQADA
ITREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=701003 NF679_RS25700 WP_252868465.1 5684457..5685950(+) (comM) [Pseudomonas siliginis strain OTU6MONEA1]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGGTTGGCGTGGAAGCCCCCGCTGTTACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCTGAAGCGGCGGTGAAGGAGAGCAAGGATCGCGTACGCAGCGCGATCA
TCAATTCCGGACTGCAATTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGACCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCCTGCCTGACCCTGGACGAGGTGGAATGTCT
GGGCGAGTTGGCGCTGTCGGGTGCCGTGCGGCCGGTGCGTGGTGTGCTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCGTTGGTGGTGCCTCGAGCGAATGCCGAGGAGGCGTGTCTGGCGTCGGGGTTGAAGGTGTTTGCGGTGGATCATTTG
CTGGAAGCGGTGGCGCATTTCAATGGGCATACGCCGGTGGAGCCTTACGTTTCCGACGGTTTGATGCACGCTGCCAAGCC
CTATCCCGACCTCAACGAAGTGCAGGGTCAAACAGCCGCAAAGCGCGCATTGCTGATTGCCGCAGCGGGGGCGCACAACT
TGTTGTTCAGCGGGCCTCCGGGAACCGGCAAGACGCTGCTGGCCAGTCGTCTGCCAGGATTACTGCCGCCGCTATCCGAA
TGCGAGGCGCTGGAAGTGGCAGCGATTCAATCGGTCGCCAGCGGGGTTCCCTTGACTCACTGGCCGCAGCGGCCGTTCAG
GCAACCGCACCATTCGGCGTCCGGGCCGGCATTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCATGGCGTACTGTTTCTCGATGAGTTGCCGGAGTTTGATCGCAAGGTTCTGGAAGTGCTGCGCGAGCCGTTGGAGTCC
GGGCATATCGTCATCGCCCGGGCCAAGGATCGCGTACGTTTCCCCGCGCGATTTCAATTGGTGGCAGCGATGAATCCATG
TCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCTCGTGCACACCGGACATGGTCCAGCGCTATCGCAACAAGCTGT
CAGGGCCGCTGCTGGATCGGATTGATCTGCACCTGACCGTCGCGCGGGAGGCAACCGCATTGAATCCGGCAGCCAAGCCC
GGCGAAAACAGCGCCAGCGCTGCGGCGTTGGTGGCCGAAGCGCGGGAGCGTCAGCAGAAACGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGGCTCAAGCGTCACTGCACGTTATCCACAGCCGATGAAAAATGGCTGGAAGCGGCCTGCGAGC
GATTGATCCTGTCGCTGCGCTCGGCGCATCGCCTGCTCAAGGTCGCGCGCACGCTGGCGGATCTTGAACAGGCCGATGCG
ATTACCCGCGAGCATCTGGCCGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Glaesserella parasuis strain SC1401

52.191

100

0.527
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457