Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NF678_RS01880 Genome accession   NZ_CP099600
Coordinates   438883..439947 (+) Length   354 a.a.
NCBI ID   WP_252883035.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MEDAA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433883..444947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF678_RS01870 (NF678_01870) - 434630..435898 (+) 1269 WP_016772053.1 malic enzyme-like NAD(P)-binding protein -
  NF678_RS01875 (NF678_01875) - 436219..438666 (-) 2448 WP_095181031.1 penicillin-binding protein 1A -
  NF678_RS01880 (NF678_01880) comM 438883..439947 (+) 1065 WP_252883035.1 pilus assembly protein PilM Machinery gene
  NF678_RS01885 (NF678_01885) - 439947..440513 (+) 567 WP_252883036.1 PilN domain-containing protein -
  NF678_RS01890 (NF678_01890) pilO 440510..441133 (+) 624 WP_041477570.1 type 4a pilus biogenesis protein PilO -
  NF678_RS01895 (NF678_01895) - 441130..441654 (+) 525 WP_041477571.1 pilus assembly protein PilP -
  NF678_RS01900 (NF678_01900) pilQ 441668..443746 (+) 2079 WP_150638039.1 type IV pilus secretin PilQ Machinery gene
  NF678_RS01905 (NF678_01905) aroK 443751..444269 (+) 519 WP_024011270.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38031.54 Da        Isoelectric Point: 4.7496

>NTDB_id=700948 NF678_RS01880 WP_252883035.1 438883..439947(+) (comM) [Pseudomonas siliginis strain OTU6MEDAA1]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPANAVVEKNIADLEGVGQALSRLLVKARTGVKSVAV
AVAGSAVITKVIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATHLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLDTPTQVANP
FADMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=700948 NF678_RS01880 WP_252883035.1 438883..439947(+) (comM) [Pseudomonas siliginis strain OTU6MEDAA1]
GTGCTGGGACTCTTCAATAAAAAGACCAATGCGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAACT
GAGCCGTCAGGGCGAGCGCTACCGGGTCGAGGCCTATGCGGTGGAGCCGTTGCCGGCGAACGCCGTGGTCGAAAAGAACA
TCGCCGACCTCGAAGGCGTCGGCCAGGCGCTGAGCCGGTTGCTGGTGAAAGCGCGAACCGGGGTCAAGAGCGTGGCGGTG
GCAGTGGCCGGTTCTGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGACGAACTGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGCTGGACGAAGTCGCCATCGATTTTGAAGTCCAGGGCGTCTCGCCGC
GCAACCCGGAACGGGTCAACGTGCTGCTTGCCGCCTGTCGCAAGGAAAACGTCGAGGTGCGTGAAGCGGCGCTGGCGCTC
GCCGGCCTGACCGCGCGGGTGGTGGACGTCGAGGCCTACGCCCTCGAGCGCTCGTTCGGTCTGCTGGCGACGCATCTGGC
GGCCTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGCGCGACCATGACCACTCTCAGCGTCCTGCACAACGGCA
AGATCATCTATACCCGCGAGCAATTGTTCGGCGGACGTCAGCTCACAGAAGAGATCCAGCGCCGTTACGGCCTCACGGTC
GAACAGGCGGGCCTGGCGAAAAAACAGGGCGGGCTGCCTGACGATTACGTCAGCGAGGTCTTGCAGCCATTTCGCGAGGC
ACTGGTGCAGCAAGTCTCGCGTTCGCTGCAGTTCTTCTTCGCCTCCGGCCAGTACAACGCGGTCGACCATATCCTGCTGG
CGGGCGGCACCGCCTCGGTGCCCGGGCTGGACCGTCTGATCGAACAGCGGCTGGACACGCCGACGCAGGTCGCCAACCCC
TTCGCCGACATGGCCTTGGGCAGCAAGGTCAATGCCGGAGCGCTGGCCAGTGATGCGCCAGCCTTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486