Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | SA58113_RS06230 | Genome accession | NZ_AP018562 |
| Coordinates | 1260144..1261016 (+) | Length | 290 a.a. |
| NCBI ID | WP_031786943.1 | Uniprot ID | - |
| Organism | Staphylococcus argenteus strain 58113 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1223548..1305918 | 1260144..1261016 | within | 0 |
Gene organization within MGE regions
Location: 1223548..1305918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SA58113_RS06065 (SA58113_1171) | - | 1223703..1223906 (-) | 204 | WP_001198027.1 | TM2 domain-containing protein | - |
| SA58113_RS06070 (SA58113_1172) | - | 1224207..1224695 (+) | 489 | WP_031787794.1 | peptide deformylase | - |
| SA58113_RS06075 (SA58113_1173) | fmt | 1224688..1225623 (+) | 936 | WP_000161302.1 | methionyl-tRNA formyltransferase | - |
| SA58113_RS06080 (SA58113_1174) | rsmB | 1225620..1226927 (+) | 1308 | WP_031787795.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| SA58113_RS06085 (SA58113_1175) | rlmN | 1226930..1228024 (+) | 1095 | WP_000626892.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| SA58113_RS06090 (SA58113_1176) | - | 1228031..1228774 (+) | 744 | WP_000888496.1 | protein-serine/threonine phosphatase Stp1 | - |
| SA58113_RS06095 (SA58113_1177) | pknB | 1228771..1230765 (+) | 1995 | WP_031787796.1 | serine/threonine protein kinase Stk1 | - |
| SA58113_RS06100 (SA58113_1178) | rsgA | 1231032..1231907 (+) | 876 | WP_000847920.1 | ribosome small subunit-dependent GTPase A | - |
| SA58113_RS06105 (SA58113_1179) | rpe | 1231908..1232552 (+) | 645 | WP_031787797.1 | ribulose-phosphate 3-epimerase | - |
| SA58113_RS06110 (SA58113_1180) | - | 1232559..1233203 (+) | 645 | WP_031787798.1 | thiamine diphosphokinase | - |
| SA58113_RS06115 (SA58113_1181) | rpmB | 1233453..1233641 (-) | 189 | WP_000517908.1 | 50S ribosomal protein L28 | - |
| SA58113_RS06120 (SA58113_1182) | - | 1234085..1234459 (+) | 375 | WP_031787799.1 | Asp23/Gls24 family envelope stress response protein | - |
| SA58113_RS06125 (SA58113_1183) | fakA | 1234474..1236120 (+) | 1647 | WP_031787800.1 | fatty acid kinase catalytic subunit FakA | - |
| SA58113_RS06130 (SA58113_1184) | recG | 1236294..1238354 (+) | 2061 | WP_031787801.1 | ATP-dependent DNA helicase RecG | - |
| SA58113_RS06135 (SA58113_1185) | fapR | 1238759..1239331 (+) | 573 | WP_072292002.1 | transcription factor FapR | - |
| SA58113_RS06140 (SA58113_1186) | plsX | 1239336..1240322 (+) | 987 | WP_000239751.1 | phosphate acyltransferase PlsX | - |
| SA58113_RS06145 (SA58113_1187) | fabD | 1240315..1241241 (+) | 927 | WP_031787802.1 | ACP S-malonyltransferase | - |
| SA58113_RS06150 (SA58113_1188) | fabG | 1241234..1241968 (+) | 735 | WP_000167268.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| SA58113_RS06155 (SA58113_1189) | - | 1242438..1242671 (+) | 234 | WP_000426914.1 | acyl carrier protein | - |
| SA58113_RS06160 (SA58113_1190) | rnc | 1242787..1243518 (+) | 732 | WP_000043235.1 | ribonuclease III | - |
| SA58113_RS06165 (SA58113_1191) | smc | 1243650..1247219 (+) | 3570 | WP_031788253.1 | chromosome segregation protein SMC | - |
| SA58113_RS06170 (SA58113_1192) | ftsY | 1247216..1248466 (+) | 1251 | WP_031788254.1 | signal recognition particle-docking protein FtsY | - |
| SA58113_RS06175 (SA58113_1193) | - | 1248453..1248785 (+) | 333 | WP_000531321.1 | putative DNA-binding protein | - |
| SA58113_RS06180 (SA58113_1194) | ffh | 1248810..1250177 (+) | 1368 | WP_000863483.1 | signal recognition particle protein | - |
| SA58113_RS06185 (SA58113_1195) | rpsP | 1250506..1250781 (+) | 276 | WP_000268754.1 | 30S ribosomal protein S16 | - |
| SA58113_RS06190 (SA58113_1196) | rimM | 1250968..1251471 (+) | 504 | WP_001261978.1 | ribosome maturation factor RimM | - |
| SA58113_RS06195 (SA58113_1197) | trmD | 1251471..1252208 (+) | 738 | WP_031786939.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| SA58113_RS06200 (SA58113_1198) | rplS | 1252311..1252661 (+) | 351 | WP_000181404.1 | 50S ribosomal protein L19 | - |
| SA58113_RS06205 (SA58113_1199) | - | 1252903..1255509 (-) | 2607 | WP_031786940.1 | YfhO family protein | - |
| SA58113_RS06210 (SA58113_1200) | ylqF | 1255909..1256793 (+) | 885 | WP_031786941.1 | ribosome biogenesis GTPase YlqF | - |
| SA58113_RS06215 (SA58113_1201) | - | 1256777..1257544 (+) | 768 | WP_031786942.1 | ribonuclease HII | - |
| SA58113_RS06220 (SA58113_1202) | sucC | 1257653..1258819 (+) | 1167 | WP_001020805.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| SA58113_RS06225 (SA58113_1203) | sucD | 1258841..1259749 (+) | 909 | WP_000110253.1 | succinate--CoA ligase subunit alpha | - |
| SA58113_RS06230 (SA58113_1204) | dprA | 1260144..1261016 (+) | 873 | WP_031786943.1 | DNA-processing protein DprA | Machinery gene |
| SA58113_RS06235 (SA58113_1205) | topA | 1261190..1263265 (+) | 2076 | WP_072324151.1 | type I DNA topoisomerase | - |
| SA58113_RS06240 (SA58113_1206) | trmFO | 1263421..1264728 (+) | 1308 | WP_000195261.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| SA58113_RS06245 (SA58113_1207) | xerC | 1265143..1266039 (+) | 897 | WP_031786945.1 | tyrosine recombinase XerC | - |
| SA58113_RS06250 (SA58113_1208) | hslV | 1266036..1266581 (+) | 546 | WP_000072683.1 | ATP-dependent protease subunit HslV | - |
| SA58113_RS06255 (SA58113_1209) | hslU | 1266646..1268049 (+) | 1404 | WP_000381629.1 | ATP-dependent protease ATPase subunit HslU | - |
| SA58113_RS06260 (SA58113_1210) | codY | 1268074..1268847 (+) | 774 | WP_000055333.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| SA58113_RS06265 (SA58113_1211) | rpsB | 1269124..1269891 (+) | 768 | WP_000268484.1 | 30S ribosomal protein S2 | - |
| SA58113_RS06270 | - | 1269943..1270038 (+) | 96 | WP_225995268.1 | hypothetical protein | - |
| SA58113_RS06275 (SA58113_1212) | tsf | 1270073..1270954 (+) | 882 | WP_031786946.1 | translation elongation factor Ts | - |
| SA58113_RS06280 (SA58113_1213) | pyrH | 1271091..1271813 (+) | 723 | WP_000057330.1 | UMP kinase | - |
| SA58113_RS06285 (SA58113_1214) | frr | 1271832..1272386 (+) | 555 | WP_001280034.1 | ribosome recycling factor | - |
| SA58113_RS06290 (SA58113_1215) | - | 1272747..1273517 (+) | 771 | WP_000473698.1 | isoprenyl transferase | - |
| SA58113_RS06295 (SA58113_1216) | - | 1273524..1274306 (+) | 783 | WP_000868415.1 | phosphatidate cytidylyltransferase | - |
| SA58113_RS06300 (SA58113_1217) | rseP | 1274517..1275803 (+) | 1287 | WP_031786947.1 | RIP metalloprotease RseP | - |
| SA58113_RS06305 (SA58113_1218) | - | 1275823..1277526 (+) | 1704 | WP_031786948.1 | proline--tRNA ligase | - |
| SA58113_RS06310 (SA58113_1219) | - | 1277800..1282110 (+) | 4311 | WP_078097697.1 | PolC-type DNA polymerase III | - |
| SA58113_RS06320 (SA58113_1220) | rimP | 1282386..1282853 (+) | 468 | WP_031786950.1 | ribosome maturation factor RimP | - |
| SA58113_RS06325 (SA58113_1221) | nusA | 1282874..1284049 (+) | 1176 | WP_000097470.1 | transcription termination factor NusA | - |
| SA58113_RS06330 (SA58113_1222) | rnpM | 1284070..1284354 (+) | 285 | WP_031786951.1 | RNase P modulator RnpM | - |
| SA58113_RS06335 (SA58113_1223) | - | 1284351..1284668 (+) | 318 | WP_000021269.1 | YlxQ family RNA-binding protein | - |
| SA58113_RS06340 (SA58113_1224) | infB | 1284673..1286799 (+) | 2127 | WP_000043647.1 | translation initiation factor IF-2 | - |
| SA58113_RS06345 (SA58113_1225) | rbfA | 1287128..1287478 (+) | 351 | WP_000097321.1 | 30S ribosome-binding factor RbfA | - |
| SA58113_RS06350 (SA58113_1226) | truB | 1287650..1288567 (+) | 918 | WP_000282309.1 | tRNA pseudouridine(55) synthase TruB | - |
| SA58113_RS06355 (SA58113_1227) | ribF | 1288582..1289553 (+) | 972 | WP_031786952.1 | riboflavin biosynthesis protein RibF | - |
| SA58113_RS06360 (SA58113_1228) | rpsO | 1289668..1289937 (+) | 270 | WP_001018327.1 | 30S ribosomal protein S15 | - |
| SA58113_RS06365 (SA58113_1229) | pnp | 1290304..1292400 (+) | 2097 | WP_000076680.1 | polyribonucleotide nucleotidyltransferase | - |
| SA58113_RS06375 (SA58113_1230) | rnjB | 1292643..1294316 (+) | 1674 | WP_000052592.1 | ribonuclease J2 | - |
| SA58113_RS06380 (SA58113_1231) | - | 1294588..1296960 (+) | 2373 | WP_031786953.1 | FtsK/SpoIIIE family DNA translocase | - |
| SA58113_RS06385 (SA58113_1232) | - | 1296964..1297677 (+) | 714 | WP_001293301.1 | GntR family transcriptional regulator | - |
| SA58113_RS06390 (SA58113_1233) | yfmF | 1297708..1298973 (+) | 1266 | WP_031786954.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| SA58113_RS06395 (SA58113_1234) | yfmH | 1298973..1300259 (+) | 1287 | WP_031786955.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| SA58113_RS06400 (SA58113_1235) | ymfI | 1300259..1300963 (+) | 705 | WP_000646238.1 | elongation factor P 5-aminopentanone reductase | - |
| SA58113_RS06405 (SA58113_1236) | - | 1301071..1301898 (+) | 828 | WP_031786956.1 | DUF3388 domain-containing protein | - |
| SA58113_RS06410 (SA58113_1237) | - | 1301923..1302315 (+) | 393 | WP_000859442.1 | helix-turn-helix domain-containing protein | - |
| SA58113_RS06415 (SA58113_1238) | pgsA | 1302347..1302925 (+) | 579 | WP_031786957.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| SA58113_RS06420 (SA58113_1239) | - | 1303167..1304318 (+) | 1152 | WP_031786958.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| SA58113_RS06425 (SA58113_1240) | recA | 1304483..1305526 (+) | 1044 | WP_000368169.1 | recombinase RecA | Machinery gene |
| SA58113_RS06430 | - | 1305708..1305853 (-) | 146 | Protein_1230 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33128.01 Da Isoelectric Point: 9.3910
>NTDB_id=70088 SA58113_RS06230 WP_031786943.1 1260144..1261016(+) (dprA) [Staphylococcus argenteus strain 58113]
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENLSIKNEVYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLAFGHQTHYPKSTRALRNKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDILEDYFI
Nucleotide
Download Length: 873 bp
>NTDB_id=70088 SA58113_RS06230 WP_031786943.1 1260144..1261016(+) (dprA) [Staphylococcus argenteus strain 58113]
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCTTT
CGATTAAAAATGAGGTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGCTAATGATATATTAGAAGATTACTTTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
67.123 |
100 |
0.676 |
| dprA | Staphylococcus aureus N315 |
67.123 |
100 |
0.676 |
| dprA/cilB/dalA | Streptococcus pneumoniae Rx1 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae D39 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae R6 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus pneumoniae TIGR4 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis SK321 |
37.722 |
96.897 |
0.366 |
| dprA/cilB/dalA | Streptococcus mitis NCTC 12261 |
37.367 |
96.897 |
0.362 |