Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NG836_RS02970 Genome accession   NZ_CP099575
Coordinates   675474..676961 (+) Length   495 a.a.
NCBI ID   WP_027592198.1    Uniprot ID   A0A285YSY6
Organism   Pseudomonas kermanshahensis strain F8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670474..681961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG836_RS02950 (NG836_02950) - 670823..672154 (-) 1332 WP_027592203.1 ammonium transporter -
  NG836_RS02955 (NG836_02955) glnK 672202..672540 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  NG836_RS02960 (NG836_02960) - 672926..673186 (+) 261 WP_027592202.1 accessory factor UbiK family protein -
  NG836_RS02965 (NG836_02965) - 673190..675217 (-) 2028 WP_252826211.1 DUF4034 domain-containing protein -
  NG836_RS02970 (NG836_02970) comM 675474..676961 (+) 1488 WP_027592198.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NG836_RS02975 (NG836_02975) - 676998..677426 (-) 429 WP_099455696.1 DoxX family protein -
  NG836_RS02980 (NG836_02980) - 677505..677867 (-) 363 WP_252827366.1 response regulator transcription factor -
  NG836_RS02985 (NG836_02985) - 677897..678889 (-) 993 WP_252826212.1 response regulator -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52883.62 Da        Isoelectric Point: 7.7149

>NTDB_id=700745 NG836_RS02970 WP_027592198.1 675474..676961(+) (comM) [Pseudomonas kermanshahensis strain F8]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSSLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAASGQVPVATLCDIECLGELALSGQLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLVLNSRPYPDLSEVQGQIAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVSGHAPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPSG
ETSAAVAERVAEARELQQRRQGCANAFLDLNGLRRHCPLEAADQAWLETACERLTLSLRAAHRLLKVARTLADLEGVASI
TRAHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=700745 NG836_RS02970 WP_027592198.1 675474..676961(+) (comM) [Pseudomonas kermanshahensis strain F8]
ATGTCACTTGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
TGGGCTTCCCCACCTGACCCTGGTCGGCCTGCCCGAAACCACGGTCAAGGAAAGCAAAGACCGGGTCCGCAGTGCCATCG
TCAATTCCAGCCTGGATTACCCAGCCAGGCGTATCACGCAAAACCTGGCGCCTGCCGACCTGCCCAAGGATGGCGGGCGT
TATGACCTGGCCATTGCTTTGGGCATCCTCGCCGCGAGTGGGCAGGTGCCGGTGGCCACCCTCTGCGACATCGAATGCCT
TGGCGAACTGGCGCTGTCCGGCCAGTTGCGCCCCGTGCAGGGCGTGCTACCGGCGGCGCTGGCGGCACGGGAAGCCGGCC
GGGCGTTGGTGGTACCGCGGGAGAACGCCGAGGAAGCAAGCCTGGCAGGCGGGCTGGTGGTGTATGCCGTCGGGCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAAGTGCCCTTGCCGCCGTATGCCGCCAATGGCCTGGTCTTGAACAGCCGGCC
CTACCCCGACCTCAGCGAGGTACAGGGCCAAATCGCGGCCAAGCGCGCCTTGCTGCTGGCGGCCGCCGGGGCCCATAACC
TGCTGTTTACCGGCCCGCCTGGCACCGGCAAGACCTTGCTTGCCAGCCGCCTGCCAGGGCTGTTGCCGCCACTGGACGAG
CGCGAAGCGCTGGAGGTGGCAGCCATTCAGTCAGTCAGCGGCCATGCGCCGTTGAACAGCTGGCCGCAACGCCCGTTCCG
CCACCCACACCACTCAGCCTCGGGCCCTGCGCTGGTAGGCGGTAGCAGTCGGCCGCAACCCGGCGAGATCACCTTGGCTC
ACCATGGTGTGCTGTTTCTCGATGAACTGCCCGAATTTGAGCGGCGTGTGCTGGAGGTATTGCGCGAGCCGCTCGAGTCC
GGCGAGATCGTGATTGCAAGAGCTCGGGACAAGGTACGCTTCCCTGCGCGGTTCCAGTTGGTGGCCGCGATGAACCCCTG
CCCTTGTGGCTATCTGGGCGACCCTACCGGCCGCTGCCGCTGCAGCACCGAGCAGATCCAGCGCTATCGCAACAAACTGT
CGGGCCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCGCGTGAAACCACCACCCTCAACAACCAACCCAGCGGC
GAGACCAGCGCCGCTGTCGCCGAACGGGTGGCCGAAGCACGTGAGCTGCAGCAACGCCGGCAAGGGTGCGCAAATGCCTT
TCTCGACCTCAACGGCTTGCGCCGCCATTGCCCGCTGGAGGCGGCGGACCAAGCCTGGCTGGAGACCGCCTGTGAGCGGT
TGACCCTGTCGTTGCGCGCGGCCCATCGGCTGCTGAAAGTGGCACGCACGCTGGCGGATCTGGAAGGTGTGGCGTCGATT
ACCAGGGCGCACCTGGCCGAGGCGCTGCAGTATCGGCCTGGGAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285YSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.513

100

0.57
  comM Haemophilus influenzae Rd KW20

56

100

0.566
  comM Vibrio cholerae strain A1552

56.364

100

0.564
  comM Glaesserella parasuis strain SC1401

55.09

100

0.558
  comM Legionella pneumophila str. Paris

49.9

100

0.503
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.316

100

0.481